Variant report

Variant	rs6924860
Chromosome Location	chr6:28732220-28732221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28731767..28734753-chr6:28735144..28738101,4	K562	blood:
2	chr6:28720936..28723199-chr6:28731913..28733640,2	K562	blood:
3	chr6:28730853..28733313-chr6:28805557..28808412,3	K562	blood:
4	chr6:28731867..28735071-chr6:28750775..28753093,3	K562	blood:
5	chr6:28702781..28705852-chr6:28730775..28732422,3	K562	blood:
6	chr6:28686780..28689583-chr6:28731850..28734136,2	K562	blood:
7	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:
8	chr6:28701328..28705041-chr6:28730739..28732422,3	K562	blood:
9	chr6:28693863..28696096-chr6:28729329..28732311,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11963531	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73403168	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73403188	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7762991	0.84[EUR][1000 genomes]
rs9461478	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9468420	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28731400-28732600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:28731400-28733800	Active TSS	A549	lung
3	chr6:28731600-28733200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:28731600-28733400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:28731800-28732400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr6:28731800-28732400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:28731800-28732800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:28731800-28733200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:28731800-28733400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr6:28731800-28733400	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:28731800-28734400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:28732000-28732400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:28732000-28733000	Bivalent/Poised TSS	HMEC	breast
14	chr6:28732000-28734600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:28732200-28732600	Flanking Active TSS	K562	blood
16	chr6:28732200-28733000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:28732200-28733200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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