Variant report

Variant	rs73391166
Chromosome Location	chr6:28714944-28714945
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
2	chr6:28675937..28678436-chr6:28714378..28717969,3	K562	blood:
3	chr6:28638654..28641368-chr6:28714122..28716293,2	K562	blood:
4	chr6:28712043..28717130-chr6:28723838..28729658,8	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11962141	0.86[ASN][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11964044	0.90[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968771	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969304	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382592	1.00[ASN][1000 genomes]
rs34840519	0.90[EUR][1000 genomes]
rs57147168	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58025129	1.00[EUR][1000 genomes]
rs58945456	0.86[ASN][1000 genomes]
rs59858792	0.90[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6456867	0.90[EUR][1000 genomes]
rs6923104	0.86[ASN][1000 genomes]
rs73391136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391137	1.00[EUR][1000 genomes]
rs73391164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393707	0.90[EUR][1000 genomes]
rs73402995	0.86[ASN][1000 genomes]
rs73403142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403155	1.00[EUR][1000 genomes]
rs73403156	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403159	1.00[EUR][1000 genomes]
rs73403165	1.00[EUR][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73404956	0.86[ASN][1000 genomes]
rs73404986	0.83[ASN][1000 genomes]
rs73405002	0.86[ASN][1000 genomes]
rs73407126	1.00[ASN][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409118	0.86[ASN][1000 genomes]
rs73409123	1.00[ASN][1000 genomes]
rs73409134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742658	0.86[ASN][1000 genomes]
rs7749527	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28714400-28715000	Bivalent Enhancer	HepG2	liver
2	chr6:28714400-28716200	Active TSS	A549	lung
3	chr6:28714600-28716000	Active TSS	K562	blood
4	chr6:28714800-28715000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:28714800-28715000	Active TSS	HMEC	breast
6	chr6:28714800-28715200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr6:28714800-28715400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:28714800-28715400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:28714800-28715400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:28714800-28715400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:28714800-28715400	Flanking Active TSS	NHEK	skin
12	chr6:28714800-28715600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:28714800-28716000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:28714800-28716000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:28714800-28716000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:28714800-28716000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:28714800-28716000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:28714800-28716000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:28714800-28716200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:28714800-28716200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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