Variant report

Variant	rs73409118
Chromosome Location	chr6:28636660-28636661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28633014..28636494-chr6:28636598..28640910,4	K562	blood:
2	chr6:28608281..28610496-chr6:28635070..28636865,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1015810	0.86[ASN][1000 genomes]
rs11962141	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11966949	1.00[ASN][1000 genomes]
rs11968771	0.86[ASN][1000 genomes]
rs11969304	0.86[ASN][1000 genomes]
rs2078422	0.86[ASN][1000 genomes]
rs2159274	1.00[ASN][1000 genomes]
rs2531802	0.86[ASN][1000 genomes]
rs2531812	1.00[ASN][1000 genomes]
rs2531819	0.86[ASN][1000 genomes]
rs28382592	0.86[ASN][1000 genomes]
rs2859349	0.86[ASN][1000 genomes]
rs2859350	0.86[ASN][1000 genomes]
rs2859354	0.86[ASN][1000 genomes]
rs2859371	1.00[ASN][1000 genomes]
rs2859376	1.00[ASN][1000 genomes]
rs2859377	1.00[ASN][1000 genomes]
rs2859378	1.00[ASN][1000 genomes]
rs385908	0.86[ASN][1000 genomes]
rs400987	0.86[ASN][1000 genomes]
rs403774	0.86[ASN][1000 genomes]
rs423118	0.86[ASN][1000 genomes]
rs57147168	1.00[ASN][1000 genomes]
rs58945456	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60137363	1.00[ASN][1000 genomes]
rs6923104	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73391136	0.86[ASN][1000 genomes]
rs73391164	0.86[ASN][1000 genomes]
rs73391166	0.86[ASN][1000 genomes]
rs73391169	0.86[ASN][1000 genomes]
rs73402995	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73403142	0.86[ASN][1000 genomes]
rs73404956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73405002	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73407126	0.86[ASN][1000 genomes]
rs73409123	0.86[ASN][1000 genomes]
rs73409134	0.86[ASN][1000 genomes]
rs7742658	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28627600-28641400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28634800-28643000	Weak transcription	K562	blood

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