Variant report

Variant	rs73403142
Chromosome Location	chr6:28726568-28726569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28695559..28699343-chr6:28721391..28727067,6	K562	blood:
2	chr6:28725563..28727836-chr6:28829378..28832246,2	K562	blood:
3	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
4	chr6:28708828..28711796-chr6:28725533..28729587,4	K562	blood:
5	chr6:28692707..28694832-chr6:28724756..28727492,3	K562	blood:
6	chr6:28704393..28708100-chr6:28724005..28727294,4	K562	blood:
7	chr6:28723977..28727923-chr6:28779903..28783132,3	K562	blood:
8	chr6:28688164..28689744-chr6:28726401..28728148,2	K562	blood:
9	chr6:28725484..28727930-chr6:28757614..28759136,2	K562	blood:
10	chr6:28700497..28703412-chr6:28724677..28728589,3	K562	blood:
11	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
12	chr6:28723907..28726622-chr6:28947645..28950512,2	K562	blood:
13	chr6:28724813..28727063-chr6:28829378..28832133,3	K562	blood:
14	chr6:28695145..28698066-chr6:28723238..28727067,5	K562	blood:
15	chr6:28724879..28727227-chr6:28741838..28744076,3	K562	blood:
16	chr6:28724879..28727227-chr6:28741838..28744076,2	K562	blood:
17	chr6:28676549..28680032-chr6:28724574..28727425,3	K562	blood:
18	chr6:28712043..28717130-chr6:28723838..28729658,8	K562	blood:
19	chr6:28687184..28690282-chr6:28725684..28728661,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000225595	Chromatin interaction
ENSG00000221191	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11962141	0.86[ASN][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11964044	0.90[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968771	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969304	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131103	0.90[EUR][1000 genomes]
rs34840519	0.90[EUR][1000 genomes]
rs57147168	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58025129	1.00[EUR][1000 genomes]
rs58945456	0.86[ASN][1000 genomes]
rs58971829	0.90[EUR][1000 genomes]
rs59858792	0.90[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6456867	0.90[EUR][1000 genomes]
rs6923104	0.86[ASN][1000 genomes]
rs73391136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391137	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73391164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393707	0.90[EUR][1000 genomes]
rs73402995	0.86[ASN][1000 genomes]
rs73403155	1.00[EUR][1000 genomes]
rs73403156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403159	1.00[EUR][1000 genomes]
rs73403165	1.00[EUR][1000 genomes]
rs73403179	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73403189	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73404956	0.86[ASN][1000 genomes]
rs73404986	0.83[ASN][1000 genomes]
rs73405002	0.86[ASN][1000 genomes]
rs73407126	1.00[ASN][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409118	0.86[ASN][1000 genomes]
rs73409123	1.00[ASN][1000 genomes]
rs73409134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742658	0.86[ASN][1000 genomes]
rs7749527	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28724600-28726800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:28724800-28726600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:28724800-28726600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr6:28724800-28726800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:28725000-28726600	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:28725000-28726600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:28725000-28726600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:28725000-28726600	Active TSS	K562	blood
9	chr6:28725000-28726800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:28725000-28726800	Active TSS	A549	lung
11	chr6:28725000-28726800	Active TSS	HMEC	breast
12	chr6:28725600-28726600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr6:28725600-28726600	Active TSS	NH-A	brain
14	chr6:28726000-28726600	Active TSS	Placenta	Placenta
15	chr6:28726200-28726600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:28726200-28726600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:28726200-28726600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:28726200-28726800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:28726200-28726800	Flanking Active TSS	NHEK	skin
20	chr6:28726200-28727000	Flanking Bivalent TSS/Enh	HepG2	liver
21	chr6:28726400-28726600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:28726400-28726600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
23	chr6:28726400-28726800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:28726400-28726800	Flanking Active TSS	Hela-S3	cervix

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