Variant report

Variant	rs73403179
Chromosome Location	chr6:28755612-28755613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28743433..28746834-chr6:28752955..28757172,5	K562	blood:
2	chr6:28746864..28751693-chr6:28754692..28757727,4	K562	blood:
3	chr6:28752766..28756379-chr6:28756550..28759154,4	K562	blood:
4	chr6:28753746..28756116-chr6:28862923..28865863,2	K562	blood:

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction
ENSG00000221191	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11753443	0.90[EUR][1000 genomes]
rs11759525	0.82[EUR][1000 genomes]
rs11961493	1.00[EUR][1000 genomes]
rs11962141	0.82[EUR][1000 genomes]
rs11964044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964748	0.82[EUR][1000 genomes]
rs11965253	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966136	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966547	1.00[EUR][1000 genomes]
rs11966708	0.90[EUR][1000 genomes]
rs11966949	0.90[EUR][1000 genomes]
rs11968644	0.82[EUR][1000 genomes]
rs11968771	0.90[EUR][1000 genomes]
rs11969304	0.90[EUR][1000 genomes]
rs3131103	1.00[EUR][1000 genomes]
rs34840519	1.00[EUR][1000 genomes]
rs57083092	0.82[EUR][1000 genomes]
rs57147168	0.90[EUR][1000 genomes]
rs58025129	0.90[EUR][1000 genomes]
rs58945456	0.82[EUR][1000 genomes]
rs58971829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59858792	1.00[EUR][1000 genomes]
rs60137363	0.90[EUR][1000 genomes]
rs6456867	1.00[EUR][1000 genomes]
rs6923104	0.82[EUR][1000 genomes]
rs73391136	0.90[EUR][1000 genomes]
rs73391137	0.90[EUR][1000 genomes]
rs73391164	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73391166	0.90[EUR][1000 genomes]
rs73391169	0.90[EUR][1000 genomes]
rs73393707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403142	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73403155	0.90[EUR][1000 genomes]
rs73403156	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403159	0.90[EUR][1000 genomes]
rs73403165	0.90[EUR][1000 genomes]
rs73403189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405002	0.82[EUR][1000 genomes]
rs73407223	1.00[EUR][1000 genomes]
rs73407254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408589	1.00[EUR][1000 genomes]
rs73409123	0.82[EUR][1000 genomes]
rs73409134	0.90[EUR][1000 genomes]
rs7742658	0.82[EUR][1000 genomes]
rs7749527	1.00[EUR][1000 genomes]
rs7751604	0.82[EUR][1000 genomes]
rs7755410	0.89[EUR][1000 genomes]
rs7762991	0.82[EUR][1000 genomes]
rs9461478	0.82[EUR][1000 genomes]
rs9468420	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28750400-28756400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links