Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:28563594..28565340-chr6:28579660..28581510,2	K562	blood:
2	chr6:28579345..28581830-chr6:28688286..28691469,3	K562	blood:
3	chr6:28579737..28581726-chr6:28636928..28639607,2	K562	blood:
4	chr6:28579298..28581830-chr6:28687615..28690190,2	K562	blood:
5	chr6:28579846..28585618-chr6:28609150..28616432,10	K562	blood:
6	chr6:28457570..28459445-chr6:28579762..28581303,2	K562	blood:

Variant related genes	Relation type
ENSG00000272278	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11961493	0.82[EUR][1000 genomes]
rs11962141	1.00[EUR][1000 genomes]
rs11966949	0.91[EUR][1000 genomes]
rs11968771	0.91[EUR][1000 genomes]
rs11969304	0.91[EUR][1000 genomes]
rs2108924	1.00[CEU][hapmap]
rs2159274	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2531801	1.00[CEU][hapmap]
rs2531812	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2531816	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28382592	0.82[EUR][1000 genomes]
rs2859354	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2859367	1.00[CEU][hapmap]
rs2859375	1.00[CEU][hapmap]
rs2859376	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs57083092	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57147168	0.91[EUR][1000 genomes]
rs58945456	1.00[EUR][1000 genomes]
rs6923104	1.00[EUR][1000 genomes]
rs719370	1.00[CEU][hapmap]
rs73402995	1.00[EUR][1000 genomes]
rs73403179	0.82[EUR][1000 genomes]
rs73403189	0.82[EUR][1000 genomes]
rs73404956	1.00[EUR][1000 genomes]
rs73404986	0.91[EUR][1000 genomes]
rs73405002	1.00[EUR][1000 genomes]
rs73409123	1.00[EUR][1000 genomes]
rs73409134	0.91[EUR][1000 genomes]
rs7742658	1.00[EUR][1000 genomes]
rs7751604	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv970735	chr6:28575590-28581635	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv969369	chr6:28578765-28581635	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28580400-28582800	Active TSS	K562	blood

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