Variant report

Variant	rs57147168
Chromosome Location	chr6:28651098-28651099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28642383..28644323-chr6:28648282..28651107,2	K562	blood:
2	chr6:28101995..28104180-chr6:28650669..28652910,2	K562	blood:
3	chr6:28649582..28652211-chr6:28693042..28694734,2	K562	blood:
4	chr6:28649222..28651616-chr6:28694274..28696265,2	MCF-7	breast:
5	chr6:28564953..28566880-chr6:28649469..28651175,2	MCF-7	breast:
6	chr6:28582959..28585078-chr6:28649793..28652398,2	K562	blood:

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1015810	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11962141	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964748	0.91[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968771	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969304	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2078422	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2159274	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531812	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531819	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28382592	0.86[ASN][1000 genomes]
rs2859349	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859350	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859354	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859371	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859376	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859377	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859378	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385908	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs400987	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs403774	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs423118	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57083092	0.91[EUR][1000 genomes]
rs58025129	0.81[EUR][1000 genomes]
rs58945456	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60137363	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923104	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391136	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391137	0.81[EUR][1000 genomes]
rs73391164	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391166	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391169	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73402995	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403142	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73403155	0.81[EUR][1000 genomes]
rs73403156	0.81[EUR][1000 genomes]
rs73403159	0.81[EUR][1000 genomes]
rs73403165	0.81[EUR][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73404956	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404986	0.81[EUR][1000 genomes]
rs73405002	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407126	0.86[ASN][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409118	1.00[ASN][1000 genomes]
rs73409123	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73409134	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7742658	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751604	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28642600-28653800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28650200-28651400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:28650600-28651400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:28650800-28651800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:28651000-28651200	Flanking Bivalent TSS/Enh	HepG2	liver
6	chr6:28651000-28654200	Enhancers	K562	blood

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