Variant report

Variant	rs73403165
Chromosome Location	chr6:28744888-28744889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11964044	0.90[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966547	0.90[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes]
rs11968771	0.81[EUR][1000 genomes]
rs11969304	0.81[EUR][1000 genomes]
rs3131103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34840519	0.90[EUR][1000 genomes]
rs57147168	0.81[EUR][1000 genomes]
rs58025129	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58971829	0.90[EUR][1000 genomes]
rs59858792	0.90[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes]
rs6456867	0.90[EUR][1000 genomes]
rs73391136	1.00[EUR][1000 genomes]
rs73391137	1.00[EUR][1000 genomes]
rs73391164	1.00[EUR][1000 genomes]
rs73391166	1.00[EUR][1000 genomes]
rs73391169	1.00[EUR][1000 genomes]
rs73393707	0.90[EUR][1000 genomes]
rs73403142	1.00[EUR][1000 genomes]
rs73403155	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403156	1.00[EUR][1000 genomes]
rs73403159	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73408589	0.90[EUR][1000 genomes]
rs73409134	0.81[EUR][1000 genomes]
rs7749527	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28740000-28746000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28740400-28745200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:28741000-28745000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:28742600-28745200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:28743600-28745000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:28743600-28745000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr6:28743600-28745000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:28743600-28745200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:28743600-28746000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:28744000-28745400	Flanking Active TSS	K562	blood
11	chr6:28744400-28745200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr6:28744400-28745400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
13	chr6:28744600-28745000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:28744600-28745200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:28744600-28745200	Active TSS	A549	lung
16	chr6:28744800-28745000	Bivalent Enhancer	Adipose Nuclei	Adipose
17	chr6:28744800-28745200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:28744800-28745400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
19	chr6:28744800-28745400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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