Variant report

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:28740121-28740316	K562	blood:	n/a	n/a
2	JUN	chr6:28738715-28741405	K562	blood:	n/a	n/a
3	NR2F2	chr6:28740048-28740872	K562	blood:	n/a	n/a
4	NR2F2	chr6:28739493-28740975	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28739783..28741376-chr6:28889070..28891885,2	MCF-7	breast:
2	chr6:28739105..28742072-chr6:28746732..28748309,2	K562	blood:
3	chr4:150931384..150932353-chr6:28739643..28740217,2	K562	blood:
4	chr6:28739775..28742884-chr6:28756307..28759477,3	K562	blood:
5	chr6:28739291..28741599-chr6:28752490..28754377,2	K562	blood:
6	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000221191	TF binding region
ENSG00000204713	Chromatin interaction

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11964044	0.90[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966547	0.90[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes]
rs11968771	0.81[EUR][1000 genomes]
rs11969304	0.81[EUR][1000 genomes]
rs3131103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34840519	0.90[EUR][1000 genomes]
rs57147168	0.81[EUR][1000 genomes]
rs58971829	0.90[EUR][1000 genomes]
rs59858792	0.90[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes]
rs6456867	0.90[EUR][1000 genomes]
rs73391136	1.00[EUR][1000 genomes]
rs73391137	1.00[EUR][1000 genomes]
rs73391164	1.00[EUR][1000 genomes]
rs73391166	1.00[EUR][1000 genomes]
rs73391169	1.00[EUR][1000 genomes]
rs73393707	0.90[EUR][1000 genomes]
rs73403142	1.00[EUR][1000 genomes]
rs73403155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403156	1.00[EUR][1000 genomes]
rs73403159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403165	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409134	0.81[EUR][1000 genomes]
rs7749527	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28738200-28740800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr6:28739200-28740600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:28739200-28740800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28739400-28740600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:28739600-28740200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
7	chr6:28739600-28740600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:28739600-28740800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:28739600-28741000	Flanking Active TSS	K562	blood
10	chr6:28739800-28740200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr6:28740000-28740200	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
12	chr6:28740000-28740200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:28740000-28740200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:28740000-28740600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr6:28740000-28740800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:28740000-28740800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr6:28740000-28740800	Flanking Active TSS	Hela-S3	cervix
18	chr6:28740000-28746000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

Quick Search: