Variant report

Variant	rs73403156
Chromosome Location	chr6:28735375-28735376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28731767..28734753-chr6:28735144..28738101,4	K562	blood:
2	chr6:28734776..28737188-chr6:28758091..28759724,2	K562	blood:
3	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
4	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
5	chr6:28733571..28736534-chr6:28751232..28752788,2	K562	blood:

Variant related genes	Relation type
ENSG00000235559	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11964044	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965253	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966136	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966547	0.90[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes]
rs11968771	0.81[EUR][1000 genomes]
rs11969304	0.81[EUR][1000 genomes]
rs3131103	0.90[EUR][1000 genomes]
rs34840519	0.90[EUR][1000 genomes]
rs57147168	0.81[EUR][1000 genomes]
rs58025129	1.00[EUR][1000 genomes]
rs58971829	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59858792	0.90[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes]
rs6456867	0.90[EUR][1000 genomes]
rs73391136	1.00[EUR][1000 genomes]
rs73391137	1.00[EUR][1000 genomes]
rs73391164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391166	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391169	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73393707	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403155	1.00[EUR][1000 genomes]
rs73403159	1.00[EUR][1000 genomes]
rs73403165	1.00[EUR][1000 genomes]
rs73403179	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403189	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409134	0.81[EUR][1000 genomes]
rs7749527	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28734200-28735400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
3	chr6:28734400-28735400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:28734400-28735600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr6:28734600-28735400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr6:28734600-28735400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr6:28734800-28735600	Enhancers	K562	blood
8	chr6:28735000-28735400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
9	chr6:28735200-28735400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:28735200-28735400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:28735200-28735400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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