Variant report

Variant	rs73391164
Chromosome Location	chr6:28707599-28707600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28705003..28707799-chr6:28889865..28891695,2	K562	blood:
2	chr6:28706362..28708335-chr6:28862103..28865076,2	MCF-7	breast:
3	chr6:28706840..28708346-chr6:28709488..28712383,2	MCF-7	breast:
4	chr6:28706832..28708574-chr6:28723413..28725632,2	K562	blood:
5	chr6:28706088..28707933-chr6:28709707..28711699,2	MCF-7	breast:
6	chr6:28705580..28707892-chr6:28755666..28757274,2	K562	blood:
7	chr6:28686813..28688652-chr6:28706969..28709291,2	K562	blood:
8	chr6:28704393..28708100-chr6:28724005..28727294,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204713	Chromatin interaction
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11962141	0.86[ASN][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11964044	0.90[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968771	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969304	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382592	1.00[ASN][1000 genomes]
rs34840519	0.90[EUR][1000 genomes]
rs385908	1.00[ASN][1000 genomes]
rs400987	1.00[ASN][1000 genomes]
rs403774	1.00[ASN][1000 genomes]
rs423118	1.00[ASN][1000 genomes]
rs57147168	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58025129	1.00[EUR][1000 genomes]
rs58945456	0.86[ASN][1000 genomes]
rs59858792	0.90[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6456867	0.90[EUR][1000 genomes]
rs6923104	0.86[ASN][1000 genomes]
rs73391136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391137	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73391166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393707	0.90[EUR][1000 genomes]
rs73402995	0.86[ASN][1000 genomes]
rs73403142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403155	1.00[EUR][1000 genomes]
rs73403156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403159	1.00[EUR][1000 genomes]
rs73403165	1.00[EUR][1000 genomes]
rs73403179	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73403189	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73404956	0.86[ASN][1000 genomes]
rs73404986	0.83[ASN][1000 genomes]
rs73405002	0.86[ASN][1000 genomes]
rs73407126	1.00[ASN][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409118	0.86[ASN][1000 genomes]
rs73409123	1.00[ASN][1000 genomes]
rs73409134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742658	0.86[ASN][1000 genomes]
rs7749527	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28705600-28710400	Weak transcription	A549	lung
2	chr6:28707000-28708800	Weak transcription	K562	blood
3	chr6:28707000-28710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:28707000-28711000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28707000-28711000	Weak transcription	HMEC	breast

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