Variant report

Variant	rs73409123
Chromosome Location	chr6:28643856-28643857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28636854..28639697-chr6:28643402..28645918,2	K562	blood:
2	chr6:28642383..28644323-chr6:28648282..28651107,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1015810	1.00[ASN][1000 genomes]
rs11753443	0.91[EUR][1000 genomes]
rs11961493	0.82[EUR][1000 genomes]
rs11962141	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11964748	1.00[EUR][1000 genomes]
rs11966708	0.91[EUR][1000 genomes]
rs11966949	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968771	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969304	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078422	1.00[ASN][1000 genomes]
rs2159274	0.86[ASN][1000 genomes]
rs2531812	0.86[ASN][1000 genomes]
rs2531819	1.00[ASN][1000 genomes]
rs28382592	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859349	1.00[ASN][1000 genomes]
rs2859350	1.00[ASN][1000 genomes]
rs2859353	0.83[ASN][1000 genomes]
rs2859354	1.00[ASN][1000 genomes]
rs2859371	0.86[ASN][1000 genomes]
rs2859376	0.86[ASN][1000 genomes]
rs2859377	0.86[ASN][1000 genomes]
rs2859378	0.86[ASN][1000 genomes]
rs385908	1.00[ASN][1000 genomes]
rs400987	1.00[ASN][1000 genomes]
rs403774	1.00[ASN][1000 genomes]
rs423118	1.00[ASN][1000 genomes]
rs57083092	1.00[EUR][1000 genomes]
rs57147168	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58945456	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60137363	0.86[ASN][1000 genomes]
rs6923104	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391136	1.00[ASN][1000 genomes]
rs73391164	1.00[ASN][1000 genomes]
rs73391166	1.00[ASN][1000 genomes]
rs73391169	1.00[ASN][1000 genomes]
rs73402995	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73403142	1.00[ASN][1000 genomes]
rs73403179	0.82[EUR][1000 genomes]
rs73403189	0.82[EUR][1000 genomes]
rs73404956	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73404986	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73405002	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73407126	1.00[ASN][1000 genomes]
rs73407223	0.82[EUR][1000 genomes]
rs73409118	0.86[ASN][1000 genomes]
rs73409134	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742658	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7751604	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28642600-28653800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28643000-28644000	Enhancers	K562	blood

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