Variant report

Variant	rs60137363
Chromosome Location	chr6:28668830-28668831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27754884..27756658-chr6:28667603..28670303,2	K562	blood:
2	chr6:28664889..28672891-chr6:28674189..28678694,12	K562	blood:
3	chr6:28666298..28671313-chr6:28695437..28699521,5	K562	blood:
4	chr6:28663130..28666549-chr6:28666706..28669998,7	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1015810	0.86[ASN][1000 genomes]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11962141	1.00[ASN][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968771	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969304	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2078422	0.86[ASN][1000 genomes]
rs2531819	0.86[ASN][1000 genomes]
rs28382592	0.86[ASN][1000 genomes]
rs2859349	0.86[ASN][1000 genomes]
rs2859350	0.86[ASN][1000 genomes]
rs2859354	0.86[ASN][1000 genomes]
rs2859377	1.00[ASN][1000 genomes]
rs2859378	1.00[ASN][1000 genomes]
rs385908	0.86[ASN][1000 genomes]
rs400987	0.86[ASN][1000 genomes]
rs403774	0.86[ASN][1000 genomes]
rs423118	0.86[ASN][1000 genomes]
rs57147168	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58025129	1.00[EUR][1000 genomes]
rs58945456	1.00[ASN][1000 genomes]
rs6923104	1.00[ASN][1000 genomes]
rs73391136	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391137	1.00[EUR][1000 genomes]
rs73391164	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391166	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391169	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73402995	1.00[ASN][1000 genomes]
rs73403142	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73403155	1.00[EUR][1000 genomes]
rs73403156	1.00[EUR][1000 genomes]
rs73403159	1.00[EUR][1000 genomes]
rs73403165	1.00[EUR][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73404956	1.00[ASN][1000 genomes]
rs73405002	1.00[ASN][1000 genomes]
rs73407126	0.86[ASN][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409118	1.00[ASN][1000 genomes]
rs73409123	0.86[ASN][1000 genomes]
rs73409134	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7742658	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28667400-28669000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28668000-28671200	Weak transcription	K562	blood
3	chr6:28668600-28676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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