Variant report

Variant	rs9468430
Chromosome Location	chr6:28830057-28830058
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000233366	Chromatin interaction
ENSG00000225173	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11753443	0.83[EUR][1000 genomes]
rs11963531	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11966136	0.83[EUR][1000 genomes]
rs11966708	0.83[EUR][1000 genomes]
rs1925764	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929090	0.83[ASN][1000 genomes]
rs73407249	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73407250	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7739709	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762991	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763504	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9461478	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468420	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9501112	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501420	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	esv3403240	chr6:28808022-28832799	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28825400-28830200	Weak transcription	K562	blood
2	chr6:28828400-28830800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:28829400-28830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:28829600-28831000	Weak transcription	HMEC	breast
5	chr6:28829600-28831400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:28829800-28831200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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