Variant report
| Variant | rs9501420 |
|---|---|
| Chromosome Location | chr6:28825462-28825463 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAX | chr6:28825348-28825763 | K562 | blood: | n/a | n/a |
| 2 | GTF3C2 | chr6:28825350-28825598 | K562 | blood: | n/a | n/a |
| 3 | USF1 | chr6:28825457-28825811 | K562 | blood: | n/a | n/a |
| 4 | ZNF384 | chr6:28825145-28825824 | K562 | blood: | n/a | n/a |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL13P | TF binding region |
| ENSG00000224157 | Chromatin interaction |
| ENSG00000263426 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11963531 | 0.81[ASN][1000 genomes] |
| rs1925764 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6929090 | 0.83[ASN][1000 genomes] |
| rs73407249 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73407250 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7739709 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7762991 | 1.00[ASN][1000 genomes] |
| rs7763504 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9461478 | 0.81[ASN][1000 genomes] |
| rs9468420 | 0.81[ASN][1000 genomes] |
| rs9468430 | 0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9501112 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv883518 | chr6:28792477-28911802 | Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv883519 | chr6:28792477-28936556 | Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 57 gene(s) | inside rSNPs | diseases |
| 4 | esv3403240 | chr6:28808022-28832799 | Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28825400-28830200 | Weak transcription | K562 | blood |
