Variant report

Variant	rs2531818
Chromosome Location	chr6:28453102-28453103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2079705	0.87[CEU][hapmap]
rs2159274	1.00[CHB][hapmap]
rs2394101	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2531812	1.00[CHB][hapmap]
rs2531816	1.00[CHB][hapmap]
rs2531819	0.93[AFR][1000 genomes]
rs2531821	0.90[EUR][1000 genomes]
rs2859349	0.93[AFR][1000 genomes]
rs2859350	0.93[AFR][1000 genomes]
rs2859353	0.86[AFR][1000 genomes]
rs2859354	1.00[CHB][hapmap]
rs2859376	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs41270579	0.81[EUR][1000 genomes]
rs4540253	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs72844212	0.81[EUR][1000 genomes]
rs72844223	0.81[EUR][1000 genomes]
rs72854542	0.81[EUR][1000 genomes]
rs72854546	0.81[EUR][1000 genomes]
rs72854553	0.81[EUR][1000 genomes]
rs72854556	0.81[EUR][1000 genomes]
rs7770236	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28451800-28456800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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