Variant report

Variant	rs2394101
Chromosome Location	chr6:28447519-28447520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28364005..28367844-chr6:28444304..28449588,6	K562	blood:
2	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
3	chr6:28447279..28449028-chr6:28691050..28693520,2	K562	blood:
4	chr6:28445552..28448033-chr6:28451076..28452971,2	K562	blood:
5	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:
6	chr6:28446745..28449657-chr6:28455146..28458037,3	MCF-7	breast:
7	chr6:28446299..28448037-chr6:28455509..28457029,2	MCF-7	breast:
8	chr6:28429774..28433738-chr6:28446930..28450436,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11546572	0.81[EUR][1000 genomes]
rs2079705	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2232430	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2531818	0.81[EUR][1000 genomes]
rs2531821	0.89[EUR][1000 genomes]
rs28382590	0.84[EUR][1000 genomes]
rs28382595	0.84[EUR][1000 genomes]
rs28382599	0.84[EUR][1000 genomes]
rs28382602	0.82[EUR][1000 genomes]
rs28382603	0.84[EUR][1000 genomes]
rs28382609	0.82[EUR][1000 genomes]
rs28382614	0.84[EUR][1000 genomes]
rs28745594	0.84[EUR][1000 genomes]
rs34757087	0.84[EUR][1000 genomes]
rs34951544	0.84[EUR][1000 genomes]
rs35062161	0.84[EUR][1000 genomes]
rs35758328	0.84[EUR][1000 genomes]
rs41270579	1.00[EUR][1000 genomes]
rs41270589	0.91[EUR][1000 genomes]
rs41270593	0.80[EUR][1000 genomes]
rs4412194	0.85[CEU][hapmap]
rs4540253	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs55965649	0.80[EUR][1000 genomes]
rs56043329	0.82[EUR][1000 genomes]
rs56975420	0.82[EUR][1000 genomes]
rs58078500	0.84[EUR][1000 genomes]
rs59653352	0.80[EUR][1000 genomes]
rs72844204	0.86[EUR][1000 genomes]
rs72844212	1.00[EUR][1000 genomes]
rs72844218	0.91[EUR][1000 genomes]
rs72844220	0.91[EUR][1000 genomes]
rs72844223	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72844224	0.98[EUR][1000 genomes]
rs72844225	0.98[EUR][1000 genomes]
rs72844226	0.98[EUR][1000 genomes]
rs72844244	0.84[EUR][1000 genomes]
rs72850077	0.82[EUR][1000 genomes]
rs72854542	1.00[EUR][1000 genomes]
rs72854546	1.00[EUR][1000 genomes]
rs72854553	1.00[EUR][1000 genomes]
rs72854556	1.00[EUR][1000 genomes]
rs7770236	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468379	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28443400-28447800	Weak transcription	K562	blood
3	chr6:28447000-28447600	Bivalent Enhancer	HepG2	liver

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