Variant report

Variant	rs28745594
Chromosome Location	chr6:28492645-28492646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs2079705	1.00[ASN][1000 genomes]
rs2394101	0.84[EUR][1000 genomes]
rs28382590	1.00[EUR][1000 genomes]
rs28382595	1.00[EUR][1000 genomes]
rs28382599	1.00[EUR][1000 genomes]
rs28382602	0.98[EUR][1000 genomes]
rs28382603	1.00[EUR][1000 genomes]
rs28382609	0.98[EUR][1000 genomes]
rs28382614	1.00[EUR][1000 genomes]
rs34757087	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34951544	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35062161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35758328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270579	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270589	1.00[ASN][1000 genomes]
rs41270593	0.95[EUR][1000 genomes]
rs41270596	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540253	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55920503	0.88[EUR][1000 genomes]
rs55965649	0.95[EUR][1000 genomes]
rs56043329	0.98[EUR][1000 genomes]
rs56975420	0.98[EUR][1000 genomes]
rs58078500	1.00[EUR][1000 genomes]
rs59653352	0.95[EUR][1000 genomes]
rs72844204	1.00[ASN][1000 genomes]
rs72844212	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844220	1.00[ASN][1000 genomes]
rs72844223	0.84[EUR][1000 genomes]
rs72844224	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844225	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844226	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844244	1.00[EUR][1000 genomes]
rs72850077	0.98[EUR][1000 genomes]
rs72850094	0.88[EUR][1000 genomes]
rs72854535	1.00[ASN][1000 genomes]
rs72854536	1.00[ASN][1000 genomes]
rs72854542	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854546	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854553	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854556	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770236	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28490000-28493600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr6:28491400-28493000	Weak transcription	K562	blood
3	chr6:28491400-28493400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:28491600-28493000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:28491600-28493000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:28491600-28493000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:28491600-28493000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:28491600-28493200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:28491600-28493400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:28491800-28493200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:28492000-28492800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:28492400-28492800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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