The 2.0 version of rSNPBase

Variant report

Variant rs72854542
Chromosome Location chr6:28345622-28345623
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:28318400-28350800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr6:28324400-28347600 Weak transcription NHDF-Ad bronchial
3 chr6:28324400-28347800 Weak transcription Fetal Brain Male brain
4 chr6:28324400-28348200 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr6:28324400-28357200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr6:28324400-28357600 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr6:28324600-28349400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr6:28324600-28349600 Weak transcription NHEK skin
9 chr6:28324600-28358600 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr6:28325400-28350800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr6:28332000-28350600 Weak transcription Psoas Muscle Psoas
12 chr6:28333800-28345800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr6:28333800-28347800 Weak transcription HUVEC blood vessel
14 chr6:28333800-28348000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr6:28333800-28349800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr6:28333800-28349800 Weak transcription Pancreas Pancrea
17 chr6:28333800-28350800 Weak transcription Lung lung
18 chr6:28333800-28351000 Weak transcription Placenta Amnion Placenta Amnion
19 chr6:28334000-28346600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr6:28334000-28346800 Weak transcription Fetal Kidney kidney
21 chr6:28334000-28348000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr6:28334000-28350000 Weak transcription Rectal Smooth Muscle rectum
23 chr6:28334000-28350600 Weak transcription Colonic Mucosa Colon
24 chr6:28334000-28350800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr6:28334200-28346000 Weak transcription Fetal Intestine Small intestine
26 chr6:28334200-28346000 Weak transcription HMEC breast
27 chr6:28334200-28346200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr6:28334200-28347800 Weak transcription NHLF lung
29 chr6:28334200-28348000 Weak transcription H9 Cell Line embryonic stem cell
30 chr6:28334200-28348000 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr6:28334200-28348200 Weak transcription Brain Substantia Nigra brain
32 chr6:28334200-28348800 Weak transcription Fetal Heart heart
33 chr6:28334200-28349400 Weak transcription Right Ventricle heart
34 chr6:28334200-28349800 Weak transcription Aorta Aorta
35 chr6:28334200-28351000 Weak transcription Gastric stomach
36 chr6:28334200-28351200 Weak transcription Spleen Spleen
37 chr6:28334400-28345800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr6:28334400-28345800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr6:28334400-28347200 Weak transcription Muscle Satellite Cultured Cells --
40 chr6:28334400-28347400 Weak transcription HSMM muscle
41 chr6:28334400-28347600 Weak transcription H1 Cell Line embryonic stem cell
42 chr6:28334400-28347800 Weak transcription Brain Angular Gyrus brain
43 chr6:28334400-28347800 Weak transcription Brain Hippocampus Middle brain
44 chr6:28334400-28348000 Weak transcription Primary T helper cells PMA-I stimulated --
45 chr6:28334400-28348000 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr6:28334400-28348000 Weak transcription Thymus Thymus
47 chr6:28334400-28348000 Weak transcription HSMMtube muscle
48 chr6:28334400-28350600 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr6:28334400-28351000 Weak transcription Esophagus oesophagus
50 chr6:28334600-28346000 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015