Variant report

Variant	rs72844223
Chromosome Location	chr6:28454035-28454036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28451721..28454293-chr6:28455250..28457902,2	MCF-7	breast:
2	chr6:28364266..28370257-chr6:28453674..28463075,14	K562	blood:

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11546572	0.81[EUR][1000 genomes]
rs2079705	0.93[EUR][1000 genomes]
rs2232430	0.81[EUR][1000 genomes]
rs2394101	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2531818	0.81[EUR][1000 genomes]
rs2531821	0.89[EUR][1000 genomes]
rs28382590	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382595	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382599	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382602	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382603	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382609	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382614	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28745594	0.84[EUR][1000 genomes]
rs34757087	0.84[EUR][1000 genomes]
rs34951544	0.84[EUR][1000 genomes]
rs35062161	0.84[EUR][1000 genomes]
rs35758328	0.84[EUR][1000 genomes]
rs41270579	1.00[EUR][1000 genomes]
rs41270589	0.91[EUR][1000 genomes]
rs41270593	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540253	1.00[EUR][1000 genomes]
rs55920503	1.00[ASN][1000 genomes]
rs55965649	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043329	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56975420	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58078500	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59653352	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844204	0.86[EUR][1000 genomes]
rs72844212	1.00[EUR][1000 genomes]
rs72844218	0.91[EUR][1000 genomes]
rs72844220	0.91[EUR][1000 genomes]
rs72844224	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72844225	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72844226	0.98[EUR][1000 genomes]
rs72844244	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850077	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850094	1.00[ASN][1000 genomes]
rs72854542	1.00[EUR][1000 genomes]
rs72854546	1.00[EUR][1000 genomes]
rs72854553	1.00[EUR][1000 genomes]
rs72854556	1.00[EUR][1000 genomes]
rs7770236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28451800-28456800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28453600-28456600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:28453800-28454800	Enhancers	K562	blood

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