Variant report

Variant	rs72844220
Chromosome Location	chr6:28451144-28451145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28445552..28448033-chr6:28451076..28452971,2	K562	blood:
2	chr6:28361885..28364070-chr6:28448691..28451219,2	K562	blood:
3	chr6:28365591..28367177-chr6:28449783..28452341,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11546572	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2079705	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394101	0.91[EUR][1000 genomes]
rs2531821	0.81[EUR][1000 genomes]
rs28745594	1.00[ASN][1000 genomes]
rs34757087	1.00[ASN][1000 genomes]
rs34951544	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35062161	1.00[ASN][1000 genomes]
rs35758328	1.00[ASN][1000 genomes]
rs41269287	1.00[AMR][1000 genomes]
rs41269289	1.00[AFR][1000 genomes]
rs41269291	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs41270579	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540253	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844212	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72844223	0.91[EUR][1000 genomes]
rs72844224	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844225	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844226	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850297	1.00[AFR][1000 genomes]
rs72850298	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72850299	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72850300	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72850302	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72854503	1.00[AFR][1000 genomes]
rs72854506	0.87[EUR][1000 genomes]
rs72854515	1.00[AFR][1000 genomes]
rs72854521	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72854522	1.00[AFR][1000 genomes]
rs72854525	1.00[AFR][1000 genomes]
rs72854527	1.00[AFR][1000 genomes]
rs72854531	1.00[AFR][1000 genomes]
rs72854533	1.00[AFR][1000 genomes]
rs72854535	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854536	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854542	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854546	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854553	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854556	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752415	1.00[AFR][1000 genomes]
rs7770236	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell

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