Variant report

Variant	rs41270589
Chromosome Location	chr6:28403440-28403441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28397761..28399629-chr6:28401778..28405817,3	K562	blood:
2	chr6:28403109..28405484-chr6:28408551..28411110,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11546572	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2079705	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394101	0.91[EUR][1000 genomes]
rs2531821	0.81[EUR][1000 genomes]
rs28745594	1.00[ASN][1000 genomes]
rs34757087	1.00[ASN][1000 genomes]
rs34951544	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35062161	1.00[ASN][1000 genomes]
rs35758328	1.00[ASN][1000 genomes]
rs41269285	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs41269287	1.00[AMR][1000 genomes]
rs41269289	1.00[AFR][1000 genomes]
rs41269291	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs41270579	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540253	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844212	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72844220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844223	0.91[EUR][1000 genomes]
rs72844224	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844225	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844226	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846802	1.00[AFR][1000 genomes]
rs72849204	1.00[AFR][1000 genomes]
rs72849206	1.00[AFR][1000 genomes]
rs72849210	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72849214	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72849222	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72850297	1.00[AFR][1000 genomes]
rs72850298	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72850299	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72850300	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72850302	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72854503	1.00[AFR][1000 genomes]
rs72854506	0.87[EUR][1000 genomes]
rs72854515	1.00[AFR][1000 genomes]
rs72854521	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72854522	1.00[AFR][1000 genomes]
rs72854525	1.00[AFR][1000 genomes]
rs72854527	1.00[AFR][1000 genomes]
rs72854531	1.00[AFR][1000 genomes]
rs72854533	1.00[AFR][1000 genomes]
rs72854535	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854536	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854542	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854546	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854553	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854556	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752415	1.00[AFR][1000 genomes]
rs7770236	0.91[EUR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28384600-28410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28385600-28410800	Weak transcription	Lung	lung
4	chr6:28386000-28410400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:28387800-28410200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:28388000-28410400	Weak transcription	NHDF-Ad	bronchial
7	chr6:28389200-28410200	Weak transcription	NHLF	lung
8	chr6:28389400-28410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:28389600-28409800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:28389600-28410200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:28389600-28410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:28389600-28410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:28389800-28410800	Weak transcription	Colonic Mucosa	Colon
14	chr6:28390200-28410400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:28391400-28410400	Weak transcription	Fetal Intestine Large	intestine
16	chr6:28391400-28410800	Weak transcription	Placenta	Placenta
17	chr6:28391600-28410200	Weak transcription	Brain Anterior Caudate	brain
18	chr6:28391600-28410800	Weak transcription	Pancreas	Pancrea
19	chr6:28392000-28410200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:28392000-28410400	Weak transcription	NHEK	skin
21	chr6:28392200-28410400	Weak transcription	Right Ventricle	heart
22	chr6:28392400-28410000	Weak transcription	HMEC	breast
23	chr6:28392400-28410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:28393600-28410800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:28393800-28404200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:28393800-28410600	Weak transcription	Aorta	Aorta
27	chr6:28394200-28409800	Weak transcription	Fetal Heart	heart
28	chr6:28394400-28405000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:28395200-28403800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:28395200-28410200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:28395400-28409400	Weak transcription	Fetal Brain Male	brain
32	chr6:28398000-28410800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:28398600-28410400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:28398600-28410600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:28399400-28410400	Weak transcription	HSMM	muscle
36	chr6:28400600-28410200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:28400800-28403600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:28401000-28404000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:28401200-28403800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:28401800-28404000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:28402000-28404000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:28402000-28404000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:28402000-28404000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:28402000-28404000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:28402000-28404000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:28402000-28404000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr6:28402000-28404000	Strong transcription	Fetal Muscle Leg	muscle
48	chr6:28402000-28404200	Strong transcription	Left Ventricle	heart
49	chr6:28402200-28403600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:28402200-28403800	Strong transcription	H1 Cell Line	embryonic stem cell

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