The 2.0 version of rSNPBase

Variant report

Variant rs41270579
Chromosome Location chr6:28348109-28348110
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:28318400-28350800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr6:28324400-28348200 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr6:28324400-28357200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr6:28324400-28357600 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr6:28324600-28349400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr6:28324600-28349600 Weak transcription NHEK skin
7 chr6:28324600-28358600 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr6:28325400-28350800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr6:28332000-28350600 Weak transcription Psoas Muscle Psoas
10 chr6:28333800-28349800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr6:28333800-28349800 Weak transcription Pancreas Pancrea
12 chr6:28333800-28350800 Weak transcription Lung lung
13 chr6:28333800-28351000 Weak transcription Placenta Amnion Placenta Amnion
14 chr6:28334000-28350000 Weak transcription Rectal Smooth Muscle rectum
15 chr6:28334000-28350600 Weak transcription Colonic Mucosa Colon
16 chr6:28334000-28350800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr6:28334200-28348200 Weak transcription Brain Substantia Nigra brain
18 chr6:28334200-28348800 Weak transcription Fetal Heart heart
19 chr6:28334200-28349400 Weak transcription Right Ventricle heart
20 chr6:28334200-28349800 Weak transcription Aorta Aorta
21 chr6:28334200-28351000 Weak transcription Gastric stomach
22 chr6:28334200-28351200 Weak transcription Spleen Spleen
23 chr6:28334400-28350600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr6:28334400-28351000 Weak transcription Esophagus oesophagus
25 chr6:28334600-28351000 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr6:28336600-28349200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr6:28344800-28350800 Weak transcription Small Intestine intestine
28 chr6:28345000-28350200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr6:28345000-28361600 Strong transcription Dnd41 blood
30 chr6:28345200-28350200 Weak transcription Hela-S3 cervix
31 chr6:28345600-28348400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr6:28345600-28348400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
33 chr6:28345600-28348800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr6:28345600-28348800 Strong transcription Ovary ovary
35 chr6:28345600-28349400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr6:28345600-28350000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr6:28345600-28350000 Strong transcription Fetal Intestine Large intestine
38 chr6:28345600-28350000 Strong transcription NH-A brain
39 chr6:28345600-28350200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr6:28345600-28350200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr6:28345600-28350200 Strong transcription Fetal Muscle Trunk muscle
42 chr6:28345600-28350200 Strong transcription Fetal Thymus thymus
43 chr6:28345600-28350600 Strong transcription Brain Germinal Matrix brain
44 chr6:28345800-28348200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr6:28345800-28350400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr6:28346000-28349000 ZNF genes & repeats GM12878-XiMat blood
47 chr6:28346000-28350000 Strong transcription HMEC breast
48 chr6:28346000-28350200 ZNF genes & repeats K562 blood
49 chr6:28346000-28350400 Weak transcription iPS-15b Cell Line embryonic stem cell
50 chr6:28346200-28350000 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015