Variant report

Variant	rs72849222
Chromosome Location	chr6:28202354-28202355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28201636..28204164-chr6:28301226..28303340,2	K562	blood:
2	chr6:28200128..28202663-chr6:28235372..28237397,2	K562	blood:
3	chr6:28201634..28205338-chr6:28303433..28306544,4	K562	blood:
4	chr6:28202226..28208942-chr6:28209296..28217649,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1150710	1.00[ASN][1000 genomes]
rs11546572	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079705	1.00[AFR][1000 genomes]
rs41269285	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269287	1.00[ASN][1000 genomes]
rs41269289	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs41269291	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270579	1.00[AFR][1000 genomes]
rs41270589	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4540253	1.00[AFR][1000 genomes]
rs61744109	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62620226	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844204	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72844212	1.00[AFR][1000 genomes]
rs72846777	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846788	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846792	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846797	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846802	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848784	1.00[ASN][1000 genomes]
rs72848785	1.00[ASN][1000 genomes]
rs72848793	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72849204	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849206	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849210	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849214	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850297	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72850298	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850299	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72850300	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72850302	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851105	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851135	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851138	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851139	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851156	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851158	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851160	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851161	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851168	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851173	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72851179	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72851182	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854503	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854515	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854521	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854522	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854525	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854527	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854531	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854533	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72854535	1.00[AFR][1000 genomes]
rs72854536	1.00[AFR][1000 genomes]
rs72854546	1.00[AFR][1000 genomes]
rs72854556	1.00[AFR][1000 genomes]
rs7752415	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28193600-28213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:28193800-28204000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28193800-28211800	Weak transcription	Fetal Thymus	thymus
4	chr6:28193800-28218400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:28193800-28218400	Weak transcription	Stomach Mucosa	stomach
6	chr6:28194000-28211000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:28194000-28211800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:28194000-28212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:28194000-28213000	Weak transcription	Thymus	Thymus
10	chr6:28194000-28213600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:28194600-28207000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:28194800-28202800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:28194800-28202800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr6:28194800-28202800	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr6:28194800-28204200	Strong transcription	Left Ventricle	heart
16	chr6:28194800-28205000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:28195000-28202400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:28195000-28202600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:28195000-28202600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:28195000-28202600	Strong transcription	Fetal Stomach	stomach
21	chr6:28195000-28202600	Strong transcription	NHLF	lung
22	chr6:28195000-28202800	Strong transcription	Liver	Liver
23	chr6:28195000-28203000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:28195000-28203000	Strong transcription	Fetal Intestine Large	intestine
25	chr6:28195000-28203200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:28195000-28203800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:28195200-28202400	Strong transcription	Fetal Muscle Leg	muscle
28	chr6:28195200-28202400	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:28195200-28202800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:28195200-28202800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:28195200-28202800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:28195200-28202800	Strong transcription	Adipose Nuclei	Adipose
33	chr6:28195200-28203000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:28195200-28204600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:28195400-28202600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:28195400-28204600	Strong transcription	Placenta	Placenta
37	chr6:28196000-28202800	Strong transcription	K562	blood
38	chr6:28196400-28203000	Strong transcription	Brain Germinal Matrix	brain
39	chr6:28196600-28203200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr6:28196600-28203400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:28196600-28203400	Strong transcription	Fetal Brain Female	brain
42	chr6:28196800-28203400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:28196800-28212400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:28196800-28212400	Weak transcription	Small Intestine	intestine
45	chr6:28196800-28213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:28197000-28212400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:28197600-28203600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:28198800-28212200	Weak transcription	Hela-S3	cervix
49	chr6:28199000-28202400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:28199200-28213200	Weak transcription	Colonic Mucosa	Colon

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