Variant report

Variant	rs72851158
Chromosome Location	chr6:28060485-28060486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28010916..28013781-chr6:28060247..28062544,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF165-1	chr6:28060117-28063493	NONHSAT108425
2	lnc-ZNF165-1	chr6:28060205-28060623	NONHSAT108427

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1150710	1.00[ASN][1000 genomes]
rs11546572	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34957169	1.00[AMR][1000 genomes]
rs41269285	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269287	1.00[ASN][1000 genomes]
rs41269289	1.00[ASN][1000 genomes]
rs41269291	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61744109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62620226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847370	1.00[AMR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847379	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847383	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848753	1.00[AMR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes]
rs72848760	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848763	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848766	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848767	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848769	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848770	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848772	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848773	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848774	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848776	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848784	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848785	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848793	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72849204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849210	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849214	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849222	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850297	1.00[ASN][1000 genomes]
rs72850298	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850299	0.88[EUR][1000 genomes]
rs72850300	0.83[EUR][1000 genomes]
rs72850302	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854503	1.00[ASN][1000 genomes]
rs72854506	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854515	1.00[ASN][1000 genomes]
rs72854521	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854522	1.00[ASN][1000 genomes]
rs7752415	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28049600-28063000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:28050800-28061200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:28053400-28064600	Strong transcription	Placenta	Placenta
4	chr6:28057800-28065800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:28058000-28060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:28058000-28064800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:28058200-28062200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:28058200-28062200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:28058200-28072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:28058400-28060800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:28058400-28061200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:28058800-28072000	Weak transcription	HMEC	breast
13	chr6:28059200-28061000	Weak transcription	Lung	lung
14	chr6:28059200-28061200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:28059200-28063000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:28059200-28063200	Weak transcription	Pancreas	Pancrea
17	chr6:28059200-28063400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:28059200-28066800	Weak transcription	Esophagus	oesophagus
19	chr6:28059400-28061600	Weak transcription	Ovary	ovary
20	chr6:28059400-28062000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:28059400-28062000	Weak transcription	Fetal Stomach	stomach
22	chr6:28059400-28062600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:28059400-28072000	Weak transcription	Brain Substantia Nigra	brain
24	chr6:28059800-28063600	Weak transcription	Fetal Heart	heart
25	chr6:28060400-28061000	Strong transcription	NHEK	skin
26	chr6:28060400-28061400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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