Variant report

Variant	rs72851139
Chromosome Location	chr6:28042698-28042699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28042414..28044265-chr6:28350613..28353294,2	K562	blood:
2	chr6:28040138..28042745-chr6:28048469..28050463,2	K562	blood:

Variant related genes	Relation type
ENSG00000197279	Chromatin interaction
ENSG00000272009	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1150710	1.00[ASN][1000 genomes]
rs34957169	1.00[AMR][1000 genomes]
rs41269285	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269287	1.00[ASN][1000 genomes]
rs41269289	1.00[ASN][1000 genomes]
rs41269291	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61744109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62620226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847370	1.00[AMR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847379	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847383	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848753	1.00[AMR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes]
rs72848760	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848763	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848766	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848767	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848769	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848770	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848772	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848773	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848774	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848776	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848784	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848785	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72848793	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72849204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849210	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849214	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849222	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850297	1.00[ASN][1000 genomes]
rs72850298	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850299	0.88[EUR][1000 genomes]
rs72850300	0.83[EUR][1000 genomes]
rs72850302	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854503	1.00[ASN][1000 genomes]
rs72854506	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854515	1.00[ASN][1000 genomes]
rs72854521	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752415	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28042600-28046600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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