Variant report

Variant	rs72847370
Chromosome Location	chr6:27849424-27849425
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27099976..27101779-chr6:27847397..27850065,2	MCF-7	breast:
2	chr2:217881678..217884311-chr6:27848219..27850304,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124635	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs34144478	0.98[EUR][1000 genomes]
rs34957169	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41269275	0.98[EUR][1000 genomes]
rs61744109	1.00[AMR][1000 genomes]
rs72847332	0.93[EUR][1000 genomes]
rs72847342	0.88[EUR][1000 genomes]
rs72847343	0.93[EUR][1000 genomes]
rs72847348	0.93[EUR][1000 genomes]
rs72847349	0.93[EUR][1000 genomes]
rs72847355	0.98[EUR][1000 genomes]
rs72847356	0.98[EUR][1000 genomes]
rs72847361	0.98[EUR][1000 genomes]
rs72847365	0.98[EUR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72847379	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72847381	0.89[EUR][1000 genomes]
rs72847383	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848752	0.84[EUR][1000 genomes]
rs72848753	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72848760	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848763	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848766	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848767	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848769	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848770	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848772	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72848773	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848774	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848776	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848784	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848785	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72848793	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72851105	1.00[AMR][1000 genomes]
rs72851135	1.00[AMR][1000 genomes]
rs72851138	1.00[AMR][1000 genomes]
rs72851139	1.00[AMR][1000 genomes]
rs72851156	1.00[AMR][1000 genomes]
rs72851158	1.00[AMR][1000 genomes]
rs72851160	1.00[AMR][1000 genomes]
rs72851161	1.00[AMR][1000 genomes]
rs72851168	1.00[AMR][1000 genomes]
rs72851173	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
3	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
4	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
5	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27842200-27857000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:27842400-27850600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:27842600-27855600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:27842800-27855600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:27846800-27850000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:27848000-27855800	Weak transcription	Dnd41	blood
7	chr6:27848200-27855400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:27848200-27855800	Weak transcription	K562	blood
9	chr6:27848200-27857000	Weak transcription	Thymus	Thymus
10	chr6:27849200-27850600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:27849400-27850800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:27849400-27851200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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