Variant report

Variant	rs72847383
Chromosome Location	chr6:27875641-27875642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs34144478	0.95[EUR][1000 genomes]
rs34957169	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41269275	0.95[EUR][1000 genomes]
rs61744109	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62620226	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846777	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847332	0.91[EUR][1000 genomes]
rs72847342	0.86[EUR][1000 genomes]
rs72847343	0.91[EUR][1000 genomes]
rs72847348	0.91[EUR][1000 genomes]
rs72847349	0.91[EUR][1000 genomes]
rs72847355	0.95[EUR][1000 genomes]
rs72847356	0.95[EUR][1000 genomes]
rs72847361	0.95[EUR][1000 genomes]
rs72847365	0.95[EUR][1000 genomes]
rs72847370	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847381	0.95[EUR][1000 genomes]
rs72848752	0.91[EUR][1000 genomes]
rs72848753	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72848760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848772	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848793	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851105	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851135	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851138	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851139	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851156	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851158	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851160	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851161	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851168	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851173	1.00[AMR][1000 genomes]
rs72851179	1.00[AMR][1000 genomes]
rs72851182	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
4	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
5	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27871600-27883200	Weak transcription	Hela-S3	cervix
2	chr6:27872200-27876200	Strong transcription	K562	blood
3	chr6:27875600-27876200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:27875600-27876200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:27875600-27876200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:27875600-27876200	Enhancers	HMEC	breast
7	chr6:27875600-27876400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links