Variant report

Variant	rs72848784
Chromosome Location	chr6:27970783-27970784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27965316..27968016-chr6:27970592..27972506,2	K562	blood:
2	chr6:27969309..27971948-chr6:27974273..27976504,2	K562	blood:
3	chr6:27969301..27971471-chr6:27975045..27977766,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1150710	1.00[ASN][1000 genomes]
rs34144478	0.91[EUR][1000 genomes]
rs34957169	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41269275	0.91[EUR][1000 genomes]
rs41269285	1.00[ASN][1000 genomes]
rs41269287	1.00[ASN][1000 genomes]
rs61744109	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62620226	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846777	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846788	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846792	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846797	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846802	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847332	0.86[EUR][1000 genomes]
rs72847342	0.81[EUR][1000 genomes]
rs72847343	0.86[EUR][1000 genomes]
rs72847348	0.86[EUR][1000 genomes]
rs72847349	0.86[EUR][1000 genomes]
rs72847355	0.91[EUR][1000 genomes]
rs72847356	0.91[EUR][1000 genomes]
rs72847361	0.91[EUR][1000 genomes]
rs72847365	0.91[EUR][1000 genomes]
rs72847370	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847381	0.91[EUR][1000 genomes]
rs72847383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848752	0.86[EUR][1000 genomes]
rs72848753	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72848760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848767	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848769	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848770	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848772	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848773	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848793	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849204	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72849206	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72849210	1.00[ASN][1000 genomes]
rs72849214	1.00[ASN][1000 genomes]
rs72849222	1.00[ASN][1000 genomes]
rs72851105	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851135	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851138	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851139	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851156	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851158	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851160	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851161	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851168	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851173	1.00[AMR][1000 genomes]
rs72851179	1.00[AMR][1000 genomes]
rs72851182	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27969200-27971800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:27969200-27971800	Weak transcription	K562	blood
3	chr6:27969800-27972200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:27970000-27971000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:27970000-27971000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:27970000-27971200	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr6:27970200-27971200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:27970200-27971200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:27970200-27971200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:27970400-27970800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:27970400-27971600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links