Variant report

Variant	rs72847381
Chromosome Location	chr6:27873931-27873932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27872438..27874402-chr6:28097309..28099187,2	MCF-7	breast:
2	chr6:27872884..27874867-chr6:28034256..28035767,2	K562	blood:
3	chr6:27868110..27870344-chr6:27873594..27875539,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs34144478	0.91[EUR][1000 genomes]
rs34957169	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269275	0.91[EUR][1000 genomes]
rs72847332	0.86[EUR][1000 genomes]
rs72847342	0.82[EUR][1000 genomes]
rs72847343	0.86[EUR][1000 genomes]
rs72847348	0.86[EUR][1000 genomes]
rs72847349	0.86[EUR][1000 genomes]
rs72847355	0.91[EUR][1000 genomes]
rs72847356	0.91[EUR][1000 genomes]
rs72847361	0.91[EUR][1000 genomes]
rs72847365	0.91[EUR][1000 genomes]
rs72847370	0.89[EUR][1000 genomes]
rs72847377	0.91[EUR][1000 genomes]
rs72847379	0.95[EUR][1000 genomes]
rs72847383	0.95[EUR][1000 genomes]
rs72848752	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848753	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848754	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848755	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848760	0.95[EUR][1000 genomes]
rs72848763	0.95[EUR][1000 genomes]
rs72848766	0.95[EUR][1000 genomes]
rs72848767	0.95[EUR][1000 genomes]
rs72848769	0.95[EUR][1000 genomes]
rs72848770	0.95[EUR][1000 genomes]
rs72848772	0.85[EUR][1000 genomes]
rs72848773	0.95[EUR][1000 genomes]
rs72848774	0.91[EUR][1000 genomes]
rs72848776	0.91[EUR][1000 genomes]
rs72848784	0.91[EUR][1000 genomes]
rs72848785	0.86[EUR][1000 genomes]
rs72848793	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
4	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
5	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27871600-27874200	Weak transcription	Placenta	Placenta
2	chr6:27871600-27875600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:27871600-27875600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:27871600-27875600	Weak transcription	HMEC	breast
5	chr6:27871600-27875600	Weak transcription	NHEK	skin
6	chr6:27871600-27883200	Weak transcription	Hela-S3	cervix
7	chr6:27871800-27874000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:27871800-27875600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:27872200-27876200	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links