Variant report

Variant	rs72848785
Chromosome Location	chr6:27977603-27977604
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:27975975-27979128	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27969301..27971471-chr6:27975045..27977766,2	K562	blood:
2	chr6:27972416..27975036-chr6:27975260..27977885,2	MCF-7	breast:

Variant related genes	Relation type
IQCB2P	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1150710	1.00[ASN][1000 genomes]
rs34144478	0.86[EUR][1000 genomes]
rs34957169	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41269275	0.86[EUR][1000 genomes]
rs41269285	1.00[ASN][1000 genomes]
rs41269287	1.00[ASN][1000 genomes]
rs61744109	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62620226	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846777	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846788	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846792	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846797	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72846802	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847332	0.82[EUR][1000 genomes]
rs72847343	0.82[EUR][1000 genomes]
rs72847348	0.82[EUR][1000 genomes]
rs72847349	0.82[EUR][1000 genomes]
rs72847355	0.86[EUR][1000 genomes]
rs72847356	0.86[EUR][1000 genomes]
rs72847361	0.86[EUR][1000 genomes]
rs72847365	0.86[EUR][1000 genomes]
rs72847370	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847381	0.86[EUR][1000 genomes]
rs72847383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848752	0.82[EUR][1000 genomes]
rs72848753	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848767	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848769	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848770	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848772	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848773	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849204	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72849206	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72849210	1.00[ASN][1000 genomes]
rs72849214	1.00[ASN][1000 genomes]
rs72849222	1.00[ASN][1000 genomes]
rs72851105	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851135	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851138	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851139	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851156	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851158	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851160	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851161	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851168	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851173	1.00[AMR][1000 genomes]
rs72851179	1.00[AMR][1000 genomes]
rs72851182	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27976800-27978000	Weak transcription	Primary B cells from peripheral blood	blood

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