Variant report

Variant	rs72851173
Chromosome Location	chr6:28085196-28085197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28083562..28085258-chr6:28187886..28189759,2	K562	blood:
2	chr6:27861175..27863698-chr6:28083468..28086015,2	MCF-7	breast:
3	chr6:28083288..28085321-chr6:28091167..28093208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196812	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11546572	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2079705	1.00[AFR][1000 genomes]
rs34957169	1.00[AMR][1000 genomes]
rs41269285	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41269289	1.00[AFR][1000 genomes]
rs41269291	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61744109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62620226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72847370	1.00[AMR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes]
rs72847379	1.00[AMR][1000 genomes]
rs72847383	1.00[AMR][1000 genomes]
rs72848753	1.00[AMR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes]
rs72848760	1.00[AMR][1000 genomes]
rs72848763	1.00[AMR][1000 genomes]
rs72848766	1.00[AMR][1000 genomes]
rs72848767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72848769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72848770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72848772	0.83[AMR][1000 genomes]
rs72848773	1.00[AMR][1000 genomes]
rs72848774	1.00[AMR][1000 genomes]
rs72848776	1.00[AMR][1000 genomes]
rs72848784	1.00[AMR][1000 genomes]
rs72848785	1.00[AMR][1000 genomes]
rs72848793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72849204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849210	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72849214	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72849222	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72850297	1.00[AFR][1000 genomes]
rs72850298	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72850299	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72850300	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72850302	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72851105	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72851135	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72851138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72854503	1.00[AFR][1000 genomes]
rs72854506	0.88[EUR][1000 genomes]
rs72854515	1.00[AFR][1000 genomes]
rs72854521	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72854522	1.00[AFR][1000 genomes]
rs72854525	1.00[AFR][1000 genomes]
rs72854527	1.00[AFR][1000 genomes]
rs72854531	1.00[AFR][1000 genomes]
rs72854533	1.00[AFR][1000 genomes]
rs72854535	1.00[AFR][1000 genomes]
rs72854536	1.00[AFR][1000 genomes]
rs7752415	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386858	chr6:28085123-28085495	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3389045	chr6:28085143-28085465	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28073200-28091400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:28073200-28091800	Weak transcription	Right Ventricle	heart
3	chr6:28073400-28088000	Weak transcription	NHLF	lung
4	chr6:28073400-28091200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:28073400-28091400	Weak transcription	NHDF-Ad	bronchial
6	chr6:28073400-28091800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:28073400-28091800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:28073400-28091800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:28073400-28092000	Weak transcription	Small Intestine	intestine
10	chr6:28073400-28092200	Weak transcription	Esophagus	oesophagus
11	chr6:28073400-28092200	Weak transcription	Gastric	stomach
12	chr6:28073400-28092200	Weak transcription	Pancreas	Pancrea
13	chr6:28073600-28091600	Weak transcription	Hela-S3	cervix
14	chr6:28073600-28091600	Weak transcription	NHEK	skin
15	chr6:28076400-28086000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:28077000-28092400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:28080000-28092000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:28080400-28091600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:28080800-28092000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:28081200-28088400	Strong transcription	Adipose Nuclei	Adipose
21	chr6:28081200-28091600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:28081200-28091800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:28081400-28091600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:28081400-28091800	Weak transcription	Colonic Mucosa	Colon
25	chr6:28081600-28086600	Strong transcription	Primary T cells from cord blood	blood
26	chr6:28081600-28087200	Strong transcription	HSMMtube	muscle
27	chr6:28081600-28088600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:28081600-28088800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:28081600-28091800	Weak transcription	HMEC	breast
30	chr6:28081800-28089000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:28082000-28086200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:28082000-28088600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:28082000-28088800	Strong transcription	Fetal Thymus	thymus
34	chr6:28082000-28091000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:28082000-28091400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:28082000-28091600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:28082000-28092200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:28082200-28086600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:28082200-28088400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:28082200-28091000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:28082400-28088600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:28082400-28088600	Strong transcription	Fetal Muscle Leg	muscle
43	chr6:28082400-28088800	Strong transcription	Fetal Brain Female	brain
44	chr6:28082400-28089000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:28082400-28090000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:28082600-28087000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:28082600-28087000	Strong transcription	K562	blood
48	chr6:28082600-28088400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr6:28082600-28088600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr6:28082600-28088600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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