Variant report

Variant	rs72851179
Chromosome Location	chr6:28103473-28103474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:28103143-28103558	NB4	blood:	n/a	n/a
2	SPI1	chr6:28103149-28103484	GM12891	blood:	n/a	n/a
3	POLR2A	chr6:28103180-28103585	GM12892	blood:	n/a	n/a
4	CHD1	chr6:28103225-28103671	GM12878	blood:	n/a	n/a
5	SPI1	chr6:28103189-28103485	GM12891	blood:	n/a	n/a
6	MXI1	chr6:28103168-28103546	GM12878	blood:	n/a	n/a
7	USF1	chr6:28103169-28103514	K562	blood:	n/a	n/a
8	POLR2A	chr6:28103352-28103513	HUVEC	blood vessel:	n/a	n/a
9	EBF1	chr6:28103440-28103515	GM12878	blood:	n/a	n/a
10	MYC	chr6:28103152-28103504	K562	blood:	n/a	n/a
11	MYC	chr6:28103139-28103588	K562	blood:	n/a	n/a
12	MAX	chr6:28103185-28103487	K562	blood:	n/a	n/a
13	SPI1	chr6:28103168-28103638	HL-60	blood:	n/a	n/a
14	USF2	chr6:28103200-28103494	GM12878	blood:	n/a	n/a
15	MAX	chr6:28103164-28103606	K562	blood:	n/a	n/a

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28056942..28059697-chr6:28102669..28104626,2	K562	blood:
2	chr6:28102205..28104062-chr6:28218585..28221101,2	K562	blood:
3	chr6:28102806..28106129-chr6:28190797..28194598,4	K562	blood:
4	chr6:28070967..28073548-chr6:28102137..28104053,2	K562	blood:
5	chr6:28100159..28103502-chr6:28106801..28111190,4	MCF-7	breast:
6	chr6:27802664..27806163-chr6:28103303..28107418,3	K562	blood:
7	chr6:28103055..28111556-chr6:28296771..28308203,17	K562	blood:
8	chr6:27865144..27866912-chr6:28101863..28104332,2	K562	blood:
9	chr6:28103114..28106211-chr6:28315199..28319125,3	K562	blood:
10	chr6:28101934..28104561-chr6:28232844..28236223,3	K562	blood:
11	chr6:28101979..28103666-chr6:28308282..28310464,2	K562	blood:
12	chr6:28101857..28106060-chr6:28315199..28321034,6	K562	blood:
13	chr6:28060201..28062614-chr6:28101846..28104486,2	K562	blood:
14	chr6:27775939..27778512-chr6:28103052..28104837,2	K562	blood:
15	chr6:28103112..28105781-chr6:28154493..28156297,2	MCF-7	breast:
16	chr6:28101995..28104180-chr6:28650669..28652910,2	K562	blood:
17	chr6:28102102..28105139-chr6:28322040..28324310,3	K562	blood:
18	chr6:27859270..27861304-chr6:28100599..28103889,3	K562	blood:
19	chr6:28100317..28107200-chr6:28184436..28191088,8	MCF-7	breast:
20	chr6:28099723..28110178-chr6:28301599..28306918,14	K562	blood:
21	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:
22	chr6:28103203..28105926-chr6:28219159..28220709,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261839	TF binding region
ENSG00000176933	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000218016	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197062	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000219891	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11546572	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2079705	1.00[AFR][1000 genomes]
rs34957169	1.00[AMR][1000 genomes]
rs41269285	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41269289	1.00[AFR][1000 genomes]
rs41269291	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61744109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62620226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72847377	1.00[AMR][1000 genomes]
rs72847379	1.00[AMR][1000 genomes]
rs72847383	1.00[AMR][1000 genomes]
rs72848753	1.00[AMR][1000 genomes]
rs72848754	1.00[AMR][1000 genomes]
rs72848755	1.00[AMR][1000 genomes]
rs72848760	1.00[AMR][1000 genomes]
rs72848763	1.00[AMR][1000 genomes]
rs72848766	1.00[AMR][1000 genomes]
rs72848767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72848769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72848770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72848772	0.83[AMR][1000 genomes]
rs72848773	1.00[AMR][1000 genomes]
rs72848774	1.00[AMR][1000 genomes]
rs72848776	1.00[AMR][1000 genomes]
rs72848784	1.00[AMR][1000 genomes]
rs72848785	1.00[AMR][1000 genomes]
rs72848793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72849204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849210	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72849214	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72849222	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72850297	1.00[AFR][1000 genomes]
rs72850298	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72850299	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72850300	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72850302	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72851105	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72851135	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72851138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72851182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72854503	1.00[AFR][1000 genomes]
rs72854506	0.88[EUR][1000 genomes]
rs72854515	1.00[AFR][1000 genomes]
rs72854521	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72854522	1.00[AFR][1000 genomes]
rs72854525	1.00[AFR][1000 genomes]
rs72854527	1.00[AFR][1000 genomes]
rs72854531	1.00[AFR][1000 genomes]
rs72854533	1.00[AFR][1000 genomes]
rs72854535	1.00[AFR][1000 genomes]
rs72854536	1.00[AFR][1000 genomes]
rs7752415	1.00[AFR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28092800-28103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:28092800-28103800	Weak transcription	Ovary	ovary
3	chr6:28092800-28104000	Weak transcription	Aorta	Aorta
4	chr6:28092800-28104000	Weak transcription	Small Intestine	intestine
5	chr6:28092800-28104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:28093000-28103800	Weak transcription	Psoas Muscle	Psoas
7	chr6:28093000-28104000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:28093000-28104200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:28093200-28103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:28093600-28104000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:28093600-28104200	Weak transcription	Pancreas	Pancrea
12	chr6:28093600-28104400	Weak transcription	Esophagus	oesophagus
13	chr6:28093600-28104400	Weak transcription	Gastric	stomach
14	chr6:28093800-28104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:28093800-28104200	Weak transcription	Lung	lung
16	chr6:28094400-28104000	Weak transcription	Colonic Mucosa	Colon
17	chr6:28098000-28103600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:28098600-28104200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:28098800-28103800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:28098800-28104000	Weak transcription	Placenta	Placenta
21	chr6:28100600-28103800	Weak transcription	Fetal Stomach	stomach
22	chr6:28101000-28103800	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:28101000-28104000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:28101000-28104000	Weak transcription	Left Ventricle	heart
25	chr6:28101400-28104000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:28101400-28104000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:28101600-28103600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:28101800-28103600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:28101800-28103800	Enhancers	Adipose Nuclei	Adipose
30	chr6:28102000-28103800	Enhancers	Liver	Liver
31	chr6:28102000-28103800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:28102000-28104000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr6:28102200-28103600	Weak transcription	Fetal Thymus	thymus
34	chr6:28102200-28103800	Enhancers	Brain Substantia Nigra	brain
35	chr6:28102200-28104000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:28102400-28104200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:28102600-28103600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:28102600-28103600	Transcr. at gene 5' and 3'	K562	blood
39	chr6:28102600-28103800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:28102600-28103800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:28102600-28104000	Enhancers	Primary T cells from cord blood	blood
42	chr6:28102600-28104000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:28102600-28104200	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr6:28102800-28103600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:28102800-28104400	Weak transcription	Spleen	Spleen
46	chr6:28103000-28104000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr6:28103200-28103600	Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr6:28103200-28103600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:28103200-28103600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:28103200-28103600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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