Variant report

Variant	rs7739305
Chromosome Location	chr6:28469458-28469459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10080420	0.90[AMR][1000 genomes]
rs12332986	0.81[AMR][1000 genomes]
rs2191036	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs34358978	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs418898	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs426922	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs442174	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899512	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6912921	1.00[AMR][1000 genomes]
rs6927023	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6935589	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937042	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938371	1.00[AMR][1000 genomes]
rs6941222	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461457	1.00[AMR][1000 genomes]
rs9461464	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468384	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9654587	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv965633	chr6:28468341-28472194	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28466400-28473000	Weak transcription	K562	blood
2	chr6:28466600-28470800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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