Variant report

Variant	rs1150723
Chromosome Location	chr6:28251716-28251717
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28245880..28256877-chr6:28299741..28307557,21	K562	blood:
2	chr6:28180671..28183155-chr6:28250254..28252159,2	K562	blood:
3	chr6:28188896..28191056-chr6:28251556..28253787,2	K562	blood:
4	chr6:28249255..28252885-chr6:28315781..28319284,4	K562	blood:
5	chr6:28186460..28191177-chr6:28246836..28252039,7	K562	blood:
6	chr6:28249727..28254264-chr6:28300327..28304071,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176933	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000189298	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10484404	1.00[JPT][hapmap]
rs1150700	0.92[YRI][hapmap]
rs1150715	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1150722	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1150725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1225600	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1600621	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1679723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs1736892	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs1778510	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2108924	1.00[JPT][hapmap]
rs2799076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs28475822	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2859375	1.00[JPT][hapmap]
rs3757180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3757183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6456812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6456813	0.81[YRI][hapmap]
rs6456817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6899512	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6901001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6902583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6908459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6910120	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6912921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6918043	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs6918631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6922161	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6922302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6929449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6929559	1.00[JPT][hapmap]
rs6938371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7747772	1.00[JPT][hapmap]
rs7752448	1.00[JPT][hapmap]
rs7752721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7759855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7767897	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9295769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9295770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9461450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9461452	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9461453	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9461457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9468328	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9468335	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9468337	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9468341	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9468375	0.81[ASN][1000 genomes]
rs9654587	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28249800-28272200	Weak transcription	Spleen	Spleen
2	chr6:28250000-28251800	Weak transcription	Ovary	ovary
3	chr6:28250000-28252200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:28250000-28253200	Weak transcription	Placenta	Placenta
5	chr6:28250000-28254800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:28250000-28254800	Weak transcription	Pancreas	Pancrea
7	chr6:28250000-28254800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:28250000-28255000	Weak transcription	Esophagus	oesophagus
9	chr6:28250000-28258000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:28250000-28258600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:28250000-28277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:28250000-28293800	Weak transcription	Gastric	stomach
13	chr6:28250200-28251800	Weak transcription	Brain Angular Gyrus	brain
14	chr6:28250200-28252800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:28250200-28273800	Weak transcription	Thymus	Thymus
16	chr6:28250400-28252200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:28250400-28252800	Weak transcription	Fetal Brain Male	brain
18	chr6:28250400-28254000	Weak transcription	Brain Anterior Caudate	brain
19	chr6:28250400-28265600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:28250400-28278600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:28250600-28251800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:28250600-28252000	ZNF genes & repeats	Liver	Liver
23	chr6:28250600-28252400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:28250600-28253800	Weak transcription	HUVEC	blood vessel
25	chr6:28250600-28254800	Weak transcription	Fetal Thymus	thymus
26	chr6:28250600-28254800	Weak transcription	HMEC	breast
27	chr6:28250600-28254800	Weak transcription	NHDF-Ad	bronchial
28	chr6:28250600-28267000	Weak transcription	NHEK	skin
29	chr6:28250600-28270800	Weak transcription	Fetal Heart	heart
30	chr6:28250600-28280600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:28250800-28251800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:28250800-28251800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:28250800-28252000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:28250800-28252400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:28250800-28252400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:28250800-28253400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:28250800-28256400	Strong transcription	A549	lung
38	chr6:28250800-28257600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:28250800-28270000	Weak transcription	Psoas Muscle	Psoas
40	chr6:28250800-28276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:28251000-28251800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:28251000-28251800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:28251000-28251800	Weak transcription	Left Ventricle	heart
44	chr6:28251000-28251800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:28251000-28252400	Weak transcription	HSMM	muscle
46	chr6:28251000-28252800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:28251000-28253000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:28251000-28253600	Strong transcription	Osteobl	bone
49	chr6:28251000-28254200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:28251000-28255200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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