Variant report
| Variant | rs28595528 |
|---|---|
| Chromosome Location | chr8:64031492-64031493 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:64030729..64033093-chr8:64079300..64082647,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000270673 | Chromatin interaction |
| ENSG00000185728 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10094071 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2353903 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2736681 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs28366966 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28429792 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28816542 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3780126 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4739043 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4739045 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs60028259 | 0.89[EUR][1000 genomes] |
| rs60941985 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6472067 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6472068 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6472075 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6996155 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6996325 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7001383 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7004934 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7005322 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7007125 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7386567 | 0.82[EUR][1000 genomes] |
| rs7830578 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7832731 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv465701 | chr8:63951237-64080486 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv611448 | chr8:63951237-64080486 | Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv890965 | chr8:64006201-64104092 | Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
