Variant report

Variant	rs28602191
Chromosome Location	chr4:27702908-27702909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10002799	0.81[EUR][1000 genomes]
rs1031311	0.84[EUR][1000 genomes]
rs1375770	0.82[EUR][1000 genomes]
rs1375771	0.81[EUR][1000 genomes]
rs1375772	0.82[EUR][1000 genomes]
rs1375773	0.82[EUR][1000 genomes]
rs1449765	0.84[EUR][1000 genomes]
rs1449767	0.84[EUR][1000 genomes]
rs1449768	0.84[EUR][1000 genomes]
rs1542912	0.82[EUR][1000 genomes]
rs1961033	0.84[EUR][1000 genomes]
rs28435512	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297318	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35972286	0.84[EUR][1000 genomes]
rs6448531	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs719713	0.83[EUR][1000 genomes]
rs7439266	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv878770	chr4:27680483-27844411	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012113	chr4:27694978-27819838	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv537057	chr4:27694978-27819838	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27702800-27703200	Enhancers	Brain Substantia Nigra	brain
2	chr4:27702800-27703400	Enhancers	Fetal Lung	lung
3	chr4:27702800-27703600	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:27702800-27704600	Enhancers	Liver	Liver
5	chr4:27702800-27704600	Enhancers	Colon Smooth Muscle	Colon
6	chr4:27702800-27705200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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