Variant report
| Variant | rs297318 |
|---|---|
| Chromosome Location | chr4:27696748-27696749 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10002262 | 0.88[EUR][1000 genomes] |
| rs10002799 | 0.81[EUR][1000 genomes] |
| rs10013430 | 0.88[EUR][1000 genomes] |
| rs10021305 | 0.88[EUR][1000 genomes] |
| rs1031311 | 0.85[EUR][1000 genomes] |
| rs10517124 | 0.88[EUR][1000 genomes] |
| rs1375770 | 0.83[EUR][1000 genomes] |
| rs1375771 | 0.81[EUR][1000 genomes] |
| rs1375772 | 0.82[EUR][1000 genomes] |
| rs1375773 | 0.83[EUR][1000 genomes] |
| rs1449765 | 0.85[EUR][1000 genomes] |
| rs1449767 | 0.85[EUR][1000 genomes] |
| rs1449768 | 0.85[EUR][1000 genomes] |
| rs1449772 | 0.88[EUR][1000 genomes] |
| rs1449773 | 0.88[EUR][1000 genomes] |
| rs1449774 | 0.88[EUR][1000 genomes] |
| rs1449775 | 0.88[EUR][1000 genomes] |
| rs1449776 | 0.88[EUR][1000 genomes] |
| rs1542911 | 0.88[EUR][1000 genomes] |
| rs1542912 | 0.83[EUR][1000 genomes] |
| rs1961033 | 0.85[EUR][1000 genomes] |
| rs28435512 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28602191 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35972286 | 0.85[EUR][1000 genomes] |
| rs719713 | 0.84[EUR][1000 genomes] |
| rs7439266 | 0.82[EUR][1000 genomes] |
| rs963228 | 0.88[EUR][1000 genomes] |
| rs9990588 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013877 | chr4:27539626-28051576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv878770 | chr4:27680483-27844411 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012113 | chr4:27694978-27819838 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv537057 | chr4:27694978-27819838 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:27696200-27696800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr4:27696200-27696800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
