Variant report

Variant	rs28603342
Chromosome Location	chr15:74560092-74560093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12148120	0.89[ASN][1000 genomes]
rs12148756	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12148897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428161	0.96[ASN][1000 genomes]
rs58331132	0.81[ASN][1000 genomes]
rs74023461	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8031291	0.89[ASN][1000 genomes]
rs8035484	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1035367	chr15:74554972-74586538	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74557000-74561000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74557600-74563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:74557800-74563200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:74557800-74570400	Weak transcription	Fetal Brain Male	brain
5	chr15:74558000-74563400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:74558600-74562000	Weak transcription	Fetal Brain Female	brain
7	chr15:74560000-74560200	ZNF genes & repeats	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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