Variant report

Variant	rs428161
Chromosome Location	chr15:74551113-74551114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74544782..74547040-chr15:74550761..74553089,2	MCF-7	breast:
2	chr15:74550593..74553035-chr15:74555004..74556677,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12148120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12148756	0.85[ASN][1000 genomes]
rs12148897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28603342	0.96[ASN][1000 genomes]
rs74023461	0.85[ASN][1000 genomes]
rs8031291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8035484	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74546200-74551200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:74546200-74551200	Weak transcription	Fetal Brain Female	brain
3	chr15:74546200-74551600	Weak transcription	Brain Anterior Caudate	brain
4	chr15:74547600-74552600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:74548400-74551200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:74548600-74558000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:74549000-74553000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74549200-74556200	Enhancers	Brain Germinal Matrix	brain
9	chr15:74549400-74552800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr15:74549400-74553000	Enhancers	Fetal Muscle Leg	muscle
11	chr15:74549400-74557800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:74549600-74552800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr15:74550000-74557800	Enhancers	Fetal Brain Male	brain
14	chr15:74550400-74552200	Enhancers	Placenta	Placenta
15	chr15:74550600-74551400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:74550600-74551800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr15:74550600-74551800	Enhancers	HSMMtube	muscle
18	chr15:74550600-74552400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:74550600-74552400	Enhancers	Fetal Heart	heart
20	chr15:74550800-74551200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
21	chr15:74550800-74551400	Bivalent Enhancer	HSMM	muscle
22	chr15:74550800-74551600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:74550800-74551600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:74550800-74551600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:74550800-74551600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:74550800-74551600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr15:74550800-74551600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr15:74550800-74551600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:74550800-74551600	Enhancers	Brain Angular Gyrus	brain
30	chr15:74550800-74551600	Enhancers	Ovary	ovary
31	chr15:74550800-74552200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:74550800-74552600	Enhancers	Spleen	Spleen
33	chr15:74550800-74553200	Enhancers	Placenta Amnion	Placenta Amnion
34	chr15:74551000-74551600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
35	chr15:74551000-74552000	Enhancers	Right Ventricle	heart
36	chr15:74551000-74552400	Enhancers	Fetal Stomach	stomach

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