Variant report

Variant	rs28606404
Chromosome Location	chr4:80521512-80521513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10016183	1.00[AMR][1000 genomes]
rs28411841	1.00[AMR][1000 genomes]
rs28505718	1.00[AMR][1000 genomes]
rs28533450	1.00[AMR][1000 genomes]
rs28579245	1.00[AMR][1000 genomes]
rs6850327	1.00[AMR][1000 genomes]
rs73828296	1.00[AMR][1000 genomes]
rs73830506	1.00[AMR][1000 genomes]
rs73830522	1.00[AMR][1000 genomes]
rs73830541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80519400-80521800	Enhancers	Primary T cells from cord blood	blood
2	chr4:80520200-80532600	Weak transcription	Aorta	Aorta
3	chr4:80521000-80521600	Weak transcription	Psoas Muscle	Psoas
4	chr4:80521000-80522800	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:80521000-80525000	Weak transcription	K562	blood
6	chr4:80521200-80522000	Enhancers	Primary B cells from cord blood	blood
7	chr4:80521200-80523400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:80521400-80522200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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