Variant report

Variant	rs73830522
Chromosome Location	chr4:80455999-80456000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10016183	1.00[AMR][1000 genomes]
rs28411841	1.00[AMR][1000 genomes]
rs28505718	1.00[AMR][1000 genomes]
rs28533450	1.00[AMR][1000 genomes]
rs28579245	1.00[AMR][1000 genomes]
rs28606404	1.00[AMR][1000 genomes]
rs6850327	1.00[AMR][1000 genomes]
rs73828246	1.00[AMR][1000 genomes]
rs73828296	1.00[AMR][1000 genomes]
rs73830506	1.00[AMR][1000 genomes]
rs73830541	1.00[AMR][1000 genomes]
rs73830544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829980	chr4:80442108-80468775	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80455200-80456200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:80455200-80456200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:80455400-80456200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:80455600-80456200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:80455800-80456400	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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