Variant report

Variant	rs2861106
Chromosome Location	chr1:175019365-175019366
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175018453..175021258-chr1:175048643..175051325,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489330	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs10489332	0.88[CHB][hapmap]
rs11578419	0.86[ASN][1000 genomes]
rs11802280	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12140378	0.83[CHB][hapmap]
rs12691475	0.81[ASN][1000 genomes]
rs12730537	0.83[ASN][1000 genomes]
rs12735946	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12737503	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13373936	0.81[ASN][1000 genomes]
rs16847730	0.85[CEU][hapmap];0.88[CHB][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17302506	0.84[ASN][1000 genomes]
rs2072031	0.88[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2105948	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs2213853	0.83[ASN][1000 genomes]
rs2213854	0.88[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2861104	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs35035962	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35464086	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3737935	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41498747	0.82[YRI][hapmap]
rs4408114	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs57969863	0.87[ASN][1000 genomes]
rs58721108	0.86[ASN][1000 genomes]
rs60893569	0.81[EUR][1000 genomes]
rs6425316	0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6656377	0.88[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs6683495	0.83[ASN][1000 genomes]
rs6688577	0.85[YRI][hapmap]
rs9286900	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2861106	C1orf156	cis	parietal	SCAN
rs2861106	RABGAP1L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links