Variant report

Variant	rs2861307
Chromosome Location	chr10:98020652-98020653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98015434..98017077-chr10:98020003..98022495,3	MCF-7	breast:
2	chr10:98020465..98023653-chr10:98029291..98031545,3	MCF-7	breast:
3	chr10:98019198..98021083-chr10:98025208..98027242,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

rs_ID	r²[population]
rs10509708	0.86[JPT][hapmap]
rs10882772	0.86[JPT][hapmap]
rs11188697	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs11188704	0.86[JPT][hapmap]
rs11188709	0.82[JPT][hapmap]
rs11591467	0.86[JPT][hapmap]
rs11593503	1.00[CHB][hapmap]
rs11598258	0.86[JPT][hapmap]
rs12269557	0.86[JPT][hapmap]
rs12761715	0.86[JPT][hapmap]
rs12766367	0.86[JPT][hapmap]
rs12772674	0.86[JPT][hapmap]
rs12774154	0.86[JPT][hapmap]
rs12779564	0.86[JPT][hapmap]
rs17111609	0.86[JPT][hapmap]
rs17111612	0.86[JPT][hapmap]
rs17111628	0.86[JPT][hapmap]
rs34125453	0.84[ASN][1000 genomes]
rs3789937	0.86[JPT][hapmap]
rs4550161	0.84[ASN][1000 genomes]
rs7073871	0.86[JPT][hapmap]
rs71482400	0.81[EUR][1000 genomes]
rs71482401	0.84[ASN][1000 genomes]
rs9794109	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
3	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr10:98015400-98026200	Genic enhancers	Primary B cells from cord blood	blood
5	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:98015800-98023200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:98015800-98026200	Weak transcription	Esophagus	oesophagus
8	chr10:98016000-98023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:98017000-98024400	Enhancers	Stomach Mucosa	stomach
10	chr10:98018000-98021600	Weak transcription	Right Atrium	heart
11	chr10:98019000-98022800	Weak transcription	Pancreas	Pancrea
12	chr10:98019000-98023800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:98019000-98024200	Enhancers	Fetal Intestine Large	intestine
14	chr10:98019200-98022600	Enhancers	Fetal Intestine Small	intestine
15	chr10:98019400-98020800	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr10:98019400-98021800	Weak transcription	Lung	lung
17	chr10:98019600-98021000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr10:98019600-98025600	Enhancers	Liver	Liver
19	chr10:98019800-98021600	Weak transcription	HMEC	breast
20	chr10:98019800-98021800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:98019800-98022000	Weak transcription	Colonic Mucosa	Colon
22	chr10:98019800-98022800	Weak transcription	Gastric	stomach
23	chr10:98019800-98023000	Weak transcription	Spleen	Spleen
24	chr10:98019800-98023800	Weak transcription	Placenta	Placenta
25	chr10:98019800-98028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:98020000-98022000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:98020000-98029400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:98020200-98021000	Genic enhancers	GM12878-XiMat	blood
29	chr10:98020200-98021800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:98020200-98022600	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:98020200-98023400	Weak transcription	Fetal Lung	lung
32	chr10:98020200-98023800	Weak transcription	Adipose Nuclei	Adipose
33	chr10:98020400-98021600	Weak transcription	Rectal Mucosa Donor 29	rectum

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