Variant report

Variant	rs11188709
Chromosome Location	chr10:98076210-98076211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97989212..97989943-chr10:98075931..98076672,2	MCF-7	breast:
2	chr10:97803583..97805560-chr10:98074679..98076235,2	MCF-7	breast:
3	chr10:97890578..97892383-chr10:98073643..98076276,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10509708	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786277	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs10786278	0.83[ASN][1000 genomes]
rs10786279	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10882772	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882773	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs11188697	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11188702	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188704	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188705	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11591467	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593073	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593074	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11597348	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11598258	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11818942	1.00[CEU][hapmap]
rs12269557	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12761473	0.89[ASN][1000 genomes]
rs12761715	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12763059	0.89[ASN][1000 genomes]
rs12766367	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12772674	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12774154	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12779164	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12779203	0.85[ASN][1000 genomes]
rs12779564	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17111594	0.87[ASN][1000 genomes]
rs17111598	0.89[ASN][1000 genomes]
rs17111599	0.89[ASN][1000 genomes]
rs17111603	0.89[ASN][1000 genomes]
rs17111609	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17111612	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17111614	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17111622	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17111628	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17111733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1815258	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1923703	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1923707	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs1923708	0.85[CEU][hapmap];0.83[ASN][1000 genomes]
rs2146394	0.85[CEU][hapmap];0.83[ASN][1000 genomes]
rs2154183	0.85[CEU][hapmap];0.83[ASN][1000 genomes]
rs2181322	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2273891	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2861307	0.82[JPT][hapmap]
rs2861572	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34125453	0.81[ASN][1000 genomes]
rs34128907	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34220987	0.89[ASN][1000 genomes]
rs34521234	0.89[ASN][1000 genomes]
rs34943354	0.89[ASN][1000 genomes]
rs35055142	0.89[ASN][1000 genomes]
rs35259489	0.89[ASN][1000 genomes]
rs35388328	0.89[ASN][1000 genomes]
rs35531390	0.89[ASN][1000 genomes]
rs35925896	0.89[ASN][1000 genomes]
rs35933547	0.89[ASN][1000 genomes]
rs36003947	0.89[ASN][1000 genomes]
rs3789937	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3818313	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4550161	0.81[ASN][1000 genomes]
rs4917732	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7073871	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7077344	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7096879	0.83[ASN][1000 genomes]
rs71482401	0.81[ASN][1000 genomes]
rs71482402	0.89[ASN][1000 genomes]
rs71484204	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs71484205	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72811058	0.89[ASN][1000 genomes]
rs7893551	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7917592	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
2	chr10:98070400-98079800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:98071000-98079600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:98071000-98080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:98071400-98079600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:98072000-98081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:98072400-98079800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:98074600-98076600	Genic enhancers	Dnd41	blood
9	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:98075800-98076400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:98075800-98076600	Genic enhancers	Thymus	Thymus
12	chr10:98076000-98079600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:98076200-98079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links