Variant report

Variant	rs10786277
Chromosome Location	chr10:98088945-98088946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98088637..98090186-chr10:98091371..98093641,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10509708	1.00[CHB][hapmap]
rs10736102	0.93[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs10736103	0.94[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs10748673	0.84[CHD][hapmap]
rs10786278	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786282	0.84[CHD][hapmap]
rs10882772	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10882773	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882774	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882777	0.84[CHD][hapmap]
rs11188697	0.85[CHB][hapmap]
rs11188704	1.00[CHB][hapmap]
rs11188705	1.00[CHB][hapmap]
rs11188709	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs11591467	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11593073	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11593074	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11593503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11597348	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[ASN][1000 genomes]
rs11598258	1.00[CHB][hapmap]
rs11818883	0.82[CEU][hapmap]
rs11818896	0.82[CEU][hapmap]
rs11818942	0.83[CHD][hapmap]
rs12269557	1.00[CHB][hapmap]
rs12761715	1.00[CHB][hapmap]
rs12766367	1.00[CHB][hapmap]
rs12772674	1.00[CHB][hapmap]
rs12774154	1.00[CHB][hapmap]
rs12779164	1.00[CHB][hapmap]
rs12779564	1.00[CHB][hapmap]
rs17111609	1.00[CHB][hapmap]
rs17111612	1.00[CHB][hapmap]
rs17111614	1.00[CHB][hapmap]
rs17111622	1.00[CHB][hapmap]
rs17111628	1.00[CHB][hapmap]
rs17111733	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1923703	1.00[ASN][1000 genomes]
rs1923707	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154183	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273891	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2861572	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[ASN][1000 genomes]
rs2901990	0.84[CHD][hapmap]
rs3789937	1.00[CHB][hapmap]
rs3789942	0.82[CEU][hapmap];0.84[CHD][hapmap]
rs3818313	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4917732	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7073871	1.00[CHB][hapmap]
rs7077344	0.81[CEU][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs7096879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72811058	0.94[ASN][1000 genomes]
rs7893551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10786277	CHUK	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98077800-98089600	Strong transcription	Dnd41	blood
2	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
3	chr10:98080400-98089200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98084400-98089000	Strong transcription	Fetal Thymus	thymus
5	chr10:98088800-98089600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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