Variant report

Variant	rs4917732
Chromosome Location	chr10:98087577-98087578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10509708	1.00[CHB][hapmap]
rs10748673	1.00[JPT][hapmap]
rs10786277	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10786278	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786279	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10786281	1.00[JPT][hapmap]
rs10882772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882773	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10882774	0.96[ASN][1000 genomes]
rs10882777	1.00[JPT][hapmap]
rs10882778	1.00[JPT][hapmap]
rs10882783	0.82[JPT][hapmap]
rs11188697	0.82[CHB][hapmap]
rs11188704	1.00[CHB][hapmap]
rs11188705	1.00[CHB][hapmap]
rs11188709	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188724	0.80[CEU][hapmap]
rs11188725	0.80[CEU][hapmap]
rs11188734	1.00[JPT][hapmap]
rs11188735	1.00[JPT][hapmap]
rs11188736	1.00[JPT][hapmap]
rs11591467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597348	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598258	1.00[CHB][hapmap]
rs11818883	1.00[JPT][hapmap]
rs11818896	1.00[JPT][hapmap]
rs11818942	0.88[CEU][hapmap]
rs12269557	1.00[CHB][hapmap]
rs12571241	0.80[CEU][hapmap]
rs12572329	0.80[CEU][hapmap]
rs12761715	1.00[CHB][hapmap]
rs12766367	1.00[CHB][hapmap]
rs12772674	1.00[CHB][hapmap]
rs12774154	1.00[CHB][hapmap]
rs12779164	1.00[CHB][hapmap]
rs12779564	1.00[CHB][hapmap]
rs17111609	1.00[CHB][hapmap]
rs17111612	1.00[CHB][hapmap]
rs17111614	1.00[CHB][hapmap]
rs17111622	1.00[CHB][hapmap]
rs17111628	1.00[CHB][hapmap]
rs17111733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923703	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923707	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1923708	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2146393	0.82[CEU][hapmap]
rs2146394	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154183	0.82[CEU][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs2273891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2901989	0.82[CEU][hapmap]
rs2901990	1.00[JPT][hapmap]
rs3789937	1.00[CHB][hapmap]
rs3789942	1.00[JPT][hapmap]
rs3814223	1.00[JPT][hapmap]
rs3818313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073871	1.00[CHB][hapmap]
rs7077344	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7096879	1.00[ASN][1000 genomes]
rs72811058	0.94[ASN][1000 genomes]
rs7893551	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:98077800-98089600	Strong transcription	Dnd41	blood
3	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
4	chr10:98080400-98089200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:98084400-98089000	Strong transcription	Fetal Thymus	thymus
6	chr10:98087000-98087800	Bivalent Enhancer	Fetal Heart	heart
7	chr10:98087200-98087600	Enhancers	Right Atrium	heart
8	chr10:98087400-98087800	Enhancers	Right Ventricle	heart

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