Variant report

Variant	rs2146393
Chromosome Location	chr10:98108358-98108359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98107055..98108784-chr10:98114101..98116582,2	MCF-7	breast:
2	chr10:98107697..98109493-chr10:98114168..98116980,2	K562	blood:

Variant related genes	Relation type
ENSG00000197430	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10218881	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748671	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10786280	1.00[ASN][1000 genomes]
rs10882772	0.81[CEU][hapmap]
rs10882775	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882779	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10882781	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11188722	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188726	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188731	0.82[JPT][hapmap]
rs11591467	0.81[CEU][hapmap]
rs11593074	0.83[CEU][hapmap]
rs11597348	0.83[CEU][hapmap]
rs12242936	0.81[JPT][hapmap]
rs12253096	1.00[YRI][hapmap]
rs12254238	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570008	0.81[JPT][hapmap]
rs12571241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111736	0.81[JPT][hapmap]
rs1923704	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923706	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146392	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2273891	0.81[CEU][hapmap]
rs2861572	0.81[CEU][hapmap]
rs2861574	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814224	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818313	0.81[CEU][hapmap]
rs4424609	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917732	0.82[CEU][hapmap]
rs7077344	0.81[CEU][hapmap]
rs7085949	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096643	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98105000-98113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98106000-98108800	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:98106200-98109000	Weak transcription	Thymus	Thymus
4	chr10:98106200-98112600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:98106200-98113000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
7	chr10:98106400-98109200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:98106600-98112400	Weak transcription	Brain Substantia Nigra	brain
9	chr10:98106600-98112400	Weak transcription	Dnd41	blood
10	chr10:98107400-98110800	Weak transcription	Brain Angular Gyrus	brain

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