Variant report

Variant	rs11188731
Chromosome Location	chr10:98113563-98113564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98104317..98106846-chr10:98113043..98115259,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap]
rs10882767	1.00[CEU][hapmap]
rs10882779	0.81[JPT][hapmap]
rs10882781	0.81[JPT][hapmap]
rs11188710	1.00[CEU][hapmap]
rs11188724	0.85[JPT][hapmap]
rs11188725	0.85[JPT][hapmap]
rs11188729	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11188730	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12242936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253096	1.00[YRI][hapmap]
rs12254673	1.00[YRI][hapmap]
rs12256383	0.82[AFR][1000 genomes]
rs12261999	0.82[AFR][1000 genomes]
rs12262883	1.00[YRI][hapmap]
rs12411642	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412600	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413089	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12570008	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12571241	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12572329	0.85[JPT][hapmap]
rs12572610	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs17111540	1.00[CEU][hapmap]
rs17111736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923702	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2146385	1.00[CEU][hapmap]
rs2146392	0.81[JPT][hapmap]
rs2146393	0.82[JPT][hapmap]
rs2273892	1.00[CEU][hapmap]
rs28384391	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2901989	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs3789939	1.00[CEU][hapmap]
rs3814224	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs734225	1.00[CEU][hapmap]
rs734226	1.00[CEU][hapmap]
rs7896766	1.00[CEU][hapmap]
rs9651412	1.00[YRI][hapmap]
rs9651413	0.82[AFR][1000 genomes]
rs9971056	1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98110800-98114200	Enhancers	Brain Angular Gyrus	brain
3	chr10:98111200-98114200	Enhancers	Fetal Intestine Small	intestine
4	chr10:98111800-98114000	Enhancers	Fetal Intestine Large	intestine
5	chr10:98112400-98113800	Enhancers	Brain Substantia Nigra	brain
6	chr10:98112400-98114000	Enhancers	Duodenum Mucosa	Duodenum
7	chr10:98112600-98114000	Enhancers	Brain Anterior Caudate	brain
8	chr10:98112800-98116800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:98112800-98116800	Weak transcription	Pancreas	Pancrea
10	chr10:98113000-98114000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr10:98113000-98114000	Strong transcription	Thymus	Thymus
12	chr10:98113400-98113600	Enhancers	Brain Hippocampus Middle	brain
13	chr10:98113400-98114200	Enhancers	Brain Cingulate Gyrus	brain

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