Variant report

Variant	rs12254673
Chromosome Location	chr10:98123211-98123212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11188729	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188730	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188731	1.00[YRI][hapmap]
rs11188737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242936	1.00[YRI][hapmap]
rs12244618	1.00[AMR][1000 genomes]
rs12253096	1.00[YRI][hapmap]
rs12256383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261999	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262883	1.00[YRI][hapmap]
rs12266939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269568	1.00[AMR][1000 genomes]
rs12571241	1.00[YRI][hapmap]
rs2901989	1.00[YRI][hapmap]
rs3814224	1.00[YRI][hapmap]
rs9651412	1.00[YRI][hapmap]
rs9651413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9971056	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98117000-98123800	Weak transcription	Right Atrium	heart
3	chr10:98117000-98134400	Weak transcription	Thymus	Thymus
4	chr10:98118800-98130200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:98120000-98125000	Weak transcription	Brain Angular Gyrus	brain
6	chr10:98120400-98125200	Weak transcription	Brain Substantia Nigra	brain
7	chr10:98121200-98125000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:98121200-98126000	Weak transcription	Brain Anterior Caudate	brain
9	chr10:98121400-98125000	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:98123000-98124200	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links